Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00866
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   1.9  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 36  LPEKHQKYYIFAKRMTSH 89
           L E+HQK Y F +    H
Sbjct: 296 LCERHQKRYFFGRDSVDH 313


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +1

Query: 106 CNNKVPDTECCRTNSSTH 159
           CN K P+T  C      H
Sbjct: 28  CNCKAPETALCARRCQQH 45


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 28  LIYYRKSIKSTTFLRNA*LLIESTEKCNNKVP 123
           L+YYR S+  + F      L+   ++ + +VP
Sbjct: 316 LLYYRDSLALSVFALILTALLRKMQEMSIEVP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,628
Number of Sequences: 438
Number of extensions: 1061
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)