Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00865X
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 1.4
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 3.3
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 3.3
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 4.3
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 5.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 5.7
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.7
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 5.7
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 24 7.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 7.6
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 24 7.6
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 24 7.6
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 24 7.6
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 24 10.0
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 383 LRGYSHERLSFHVCVAYQSRSLDEF 309
LRGY H+RL V A + S+D F
Sbjct: 728 LRGYPHQRLDGTVPAAVRRTSIDHF 752
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 85 VTNVVGDPSFTSAILPWENVKIAYVPYKYRETLNSGLS 198
VT + ++T A+ W V I +K TLNSG+S
Sbjct: 603 VTKKIYRVTYTDALQRWNLVNIWRHIFKETVTLNSGIS 640
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 3.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 222 LGRAGGISEFTKIRVPLGVCEGIDMSKFDELVETSRLISDADVEAQPLVG--VPA 380
L A GIS + +CE + ++F ELV +S+ I+ VEA G +PA
Sbjct: 167 LSFAHGISPYNMDSQDFILCEYNNSTQFKELVNSSQDIAAVIVEAMQGAGGAIPA 221
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 120 TGETRIAYD-IGHFLQNVIAGFRYNSHVAQLILGDVI 13
+GE IA + HF Q V++G RY L+L ++
Sbjct: 416 SGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLLLRSIV 452
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 95 TLVTFFKTSSPASGITVTLLS-LFSA 21
TLV+ F+ SSPA T T L+ L SA
Sbjct: 27 TLVSTFRQSSPAKNATCTTLNHLLSA 52
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 149 LPMYRISIGRH*TAVCRSY 205
L MY+ I RH A+C+ Y
Sbjct: 187 LEMYQYVIARHLVAICKQY 205
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 219 LASLRYDRQTAVQCLPILIRYIGNFHILPRQYGTGETRIAY-DIGHFLQNVIA 64
LAS++++ +T + CL +++ +G + RI Y D+ L N+ A
Sbjct: 641 LASVKFNLETYIYCLSVVLDAMGVGGVASSSENLEAARILYNDLQEKLTNLTA 693
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 233 GTAQNSHLSGMTDKPL-FNVSLYLYGT*AIFTFSQGN 126
G + S+ S +T++ +NV +YL GT ++ ++ G+
Sbjct: 288 GASVTSNCSSITNEQWSYNVGVYLAGTAFLYNYTNGS 324
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 46 TVIPEAGDDVLKKVTNVVGDPSFTSAILPWENVKIA 153
TV E G + L ++ V+G PS LP+ K A
Sbjct: 379 TVPYEKGSNFLYEIERVIGGPSVFEPFLPFYFRKFA 414
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 93 IGHFLQNVIAGFRYNSHVAQLILGDVI 13
I L NVI GF SH QLIL +++
Sbjct: 568 IERILGNVINGFIVRSHHDQLILKELM 594
>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 1 GILMDYIAENKLSNVTVIPEAGDDVLKKVTNVVG 102
G ++++ +EN + N + P G++ KKV +G
Sbjct: 125 GRVIEFGSENNIQNFIIDPIIGNEASKKVALKLG 158
>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 161
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 10 MDYIAENKLSNVTVIPEAGDDVLKKVTNVVGDPSFTSAIL 129
MD +AE ++ ++IP+A L+ T VV D + L
Sbjct: 1 MDIVAETQIEEESLIPDATSTPLE--TEVVADTTLRKTAL 38
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 323 SLDEFVEFGHINPFADAERHPYFCKF*NSTGTAQNS 216
S+ E E ++ A +H YFC + N++ QNS
Sbjct: 65 SIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNS 100
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 157 VPYKYRETLNSGLSVIPERCEFWAVPVEFQNL 252
V Y T +S +V E CEFW E +L
Sbjct: 262 VEYMLYSTQDSDQNVALEACEFWLAIAEQPDL 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,255
Number of Sequences: 5004
Number of extensions: 34739
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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