Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00865X
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0066 - 536281-537196,537397-537452                               28   2.4  
06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    28   2.4  
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424...    26   9.5  
06_03_0778 - 24523780-24526353                                         26   9.5  

>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 286 PSQTPSGTLIFVNSEIPPARPRTRISPV*PTNRCSMSPYTYTVHRQFSHSPKAIWHW 116
           PS TP+ T     S  PP  P   + P  P  R +++P   T     + +P   W W
Sbjct: 241 PSPTPTTTRA---SPTPPPIPTATVRPPPPLPRATVTPTPTTPPSTATTTPIPTWVW 294


>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 79  KKVTNVVGDPSF--TSAILPWENVKIAYVPYKYRETL 183
           KKV  +VG+P +  +  +LPW+N++  +  ++ R +L
Sbjct: 370 KKVNLLVGEPFYLGSEGMLPWQNLRFWFDLWRSRSSL 406


>10_08_0048 -
           14441540-14441620,14442044-14442111,14442275-14442493,
           14442506-14444508,14447541-14448410,14448533-14448576,
           14449920-14450093
          Length = 1152

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 70  DVLKKVTNVVGDPSFTSAILPW-ENVKIAYVPYKYRETLNSGLS 198
           D+LKK  N         A+L   EN KI Y+PY+  + +NSG S
Sbjct: 702 DMLKKGKNTKRSLEAAKAVLEAVENNKI-YLPYEKTKPVNSGSS 744


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 289 IPSQTPSGTLIFVNSEIPPARPRTRISPV 203
           +PS T S +  F++++ P  RPR    PV
Sbjct: 824 LPSYTDSSSSSFIHTDSPALRPRGSSCPV 852


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,740
Number of Sequences: 37544
Number of extensions: 231855
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)