Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00864
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 28 1.8
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 2.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 4.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 5.5
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.3
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 9.7
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 9.7
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 25 9.7
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 9.7
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 490 ALSPNRDCTVRYTTTGTVSPRTCTTRNTDT 579
+LSPN T + TTT T +P T TT T
Sbjct: 926 SLSPNTVTTTKATTTFTPTPTTTTTPTPTT 955
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Frame = +1
Query: 382 WRRNVEEAI---ATGTVRLPNGQTRPLDIDTLGNMLES-SALSPNRDCTVRYTTTGTVSP 549
WRR + ++ A G + RP+ + L ++ + N C GT
Sbjct: 23 WRRGPDNSLLCNACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGTCAGDGFCNGTGGS 82
Query: 550 RTCTTRNTDTLNNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPT 693
+CT LNN + SL + + S + P+S+ S T+ PT
Sbjct: 83 ASCT--GCPALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASPT 128
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 589 NCSRYLCSGSCMYAVKLCP--LLCIEPYSLCSARGRWTP 479
N + ++ SG LCP L+C+ C R WTP
Sbjct: 274 NVADFILSGLQSDHTNLCPSFLVCLHSLLYCYGRNFWTP 312
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -1
Query: 416 PVAIASSTFLLQRSI--SSMVTNRL--RPHDSGPAIAYRTDAAAIRATKSNCQA*GSKLW 249
P ++ + + LQ S+ SSM L + + + + I TK + +A GSK
Sbjct: 215 PESLTNQSSSLQSSLQTSSMAPRNLLDQSTEKDIVVGASDELVRIELTKLSKEAGGSKTL 274
Query: 248 NWLPPVAEFFNSF 210
N L V +FF F
Sbjct: 275 NELDAVQQFFQEF 287
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 438 PVWQSNGTSRDSFFNVSSPAFH 373
P++QSNG + S +NV S + H
Sbjct: 326 PLYQSNGNEKSSKYNVFSESAH 347
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 364 IDEMERWRRNVEEAIATGTVRLPNGQTRPL-----DIDTLGNML 480
ID + +W R+V E + GT+ L G T L D++ +G+M+
Sbjct: 236 IDALLQWTRSVAECLKNGTL-LKIGNTDSLSSDVMDVEDMGSMM 278
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 514 TVRYTTTGTVSPRTCTTRNTDTLNNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPT 693
+V YT+T SP + ++ +T N + + SST+ TS + +T T
Sbjct: 596 SVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSST 655
Query: 694 CVLTLDLSSRT 726
+ T S+ T
Sbjct: 656 SISTSSSSTAT 666
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 16 KKNTALRTGEKISASTCIIITGIWSTRLRPTIFQS*LRTVVG 141
K NT G+ S S II WST L+ IF+ T++G
Sbjct: 410 KGNTYHAKGKHYSLSFSIINI-FWSTALKSYIFEKFTNTILG 450
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 552 YMHDPEHRYLEQFGVIADEATTMRDPFFYRWHAYIDDVFQ 671
Y D EHR+L + G E + D ++ YI ++Q
Sbjct: 171 YTIDEEHRFLRELGRFEIEKLKIEDMEVEEFNYYITTLYQ 210
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/29 (24%), Positives = 19/29 (65%)
Frame = -1
Query: 662 VIDVGVPAVEEWIAHRCGLISDNTKLFKV 576
++D+G+P + + + H C +++ N K+ +
Sbjct: 83 LLDIGMPVMHKAMRHNCRILALNGKILLI 111
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 645 HAYIDDVFQKHKESAYVRPYTRSELENPGV 734
H +D+V ++H+ + P S LE G+
Sbjct: 474 HKMVDEVLERHRHRYEINPAFVSRLEQGGI 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,771
Number of Sequences: 5004
Number of extensions: 72002
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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