Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00864
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 32 0.62
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 30 1.9
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 29 4.4
09_02_0447 + 9452850-9454121,9454299-9454325 29 5.8
03_04_0237 - 19201789-19202421 29 5.8
10_02_0046 + 4533959-4533988,4534061-4534136,4534225-4535111,454... 28 7.7
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 28 7.7
05_06_0243 - 26639497-26641173 28 7.7
03_05_0197 + 21884415-21885332,21886130-21886750 28 7.7
03_01_0608 + 4471738-4472115 28 7.7
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 31.9 bits (69), Expect = 0.62
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Frame = +1
Query: 406 IATGTVRLPNG-QTRPLDIDTLG-------NMLESSALS-PNRDCTVRYTT-TGTVSPRT 555
++T T ++P+ +T PL T ++L SS P+ T +T TG + T
Sbjct: 517 LSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTT 576
Query: 556 CTTRNTDTLNNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPTCVLTLDLSSRT 726
CT+ + + S T+ TP++ S ST +PT T +LS+ T
Sbjct: 577 CTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPT 633
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 155 YAPASDSPLQLRALVQFIKKS*KIQQLEGANSRAYFPKLDSL 280
YA A S +Q + + +KK KI++ + A+S +F +LD L
Sbjct: 213 YAKAPKSDVQCKNRIDTLKKKYKIERAKPASSWQFFGRLDDL 254
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 481 ESSALSPNRDCTVRYTTTGTVSPRTCTTRNTD 576
+S+ +S NR+ TVR + TV+ R CT + D
Sbjct: 485 KSNVVSANRNITVRSSYFKTVNKRVCTNQGED 516
>09_02_0447 + 9452850-9454121,9454299-9454325
Length = 432
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 569 FRVVHVRGETVPVVVYRTVQSLFGERALDSNML--PSVSMSRGRVCPFGNLTVPVAIASS 396
FR +H G VYRTV +G N + PS ++ G C F +P +S
Sbjct: 71 FRTLH--GAHRVAGVYRTVDPAYGRPLPGGNFVFVPSTPLAAGDSCCFALDFLPYGGRNS 128
Query: 395 TFLLQRSISSMVTNRLRPHDSGPAIAYR 312
LL ++ ++ RP G A + R
Sbjct: 129 WELLDCRGGLLLLSKKRPRFGGVATSRR 156
>03_04_0237 - 19201789-19202421
Length = 210
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 473 LPSVSMSRGRVCPFGNLTVPVAIASSTFLLQRSISSMVTNRLRPHDS 333
LP + M+ G P G++ +PV ST + I + N P+++
Sbjct: 59 LPIIGMTLGHTWPLGHIELPVTFGDSTNFRTKRIDFDMANLNLPYNA 105
>10_02_0046 +
4533959-4533988,4534061-4534136,4534225-4535111,
4546711-4546746
Length = 342
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 780 VFGCPPASPPTRTSLARPGSRAQIECKDARRQI--PC 676
+FG PP SPPT + G +A +E + + PC
Sbjct: 277 LFGSPPHSPPTSPLAIQNGKKAAVETSASEYSLTAPC 313
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 689 LRASLHSI*AREPGRASEVRVGGDAGGQPNTLNTFWMLSD 808
+ +S H + A +P S+ + GG GG T FW L D
Sbjct: 1 MASSPHQVVAPQP--QSQAQAGGGGGGGGGTAEQFWSLLD 38
>05_06_0243 - 26639497-26641173
Length = 558
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 765 PASPPTRTSLARPGSRAQIECKDARRQIPCASGKRHRCRRASGRRMDR 622
PA PP+ T P + ++ ARR P A+ R R + RR DR
Sbjct: 3 PAPPPS-THSTAPFATPEVRSVAARRPRPAAASISARLRDVARRRKDR 49
>03_05_0197 + 21884415-21885332,21886130-21886750
Length = 512
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 319 AMAGPESCGRSLFVTIDEMERWRRNVEEAIATGTVRLP-NGQTR-PLDIDTLGNML 480
AM E C RSL +D++ R + EE + +RL NG + PL D + N++
Sbjct: 250 AMRETERCNRSLMAIMDDIIREHGDGEEDLLGVLLRLQRNGDVQCPLTTDLITNVV 305
>03_01_0608 + 4471738-4472115
Length = 125
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 FNCERLCNSLKRVKKFSNW-REPIPE 254
F CER+C S + +KK + ++PIPE
Sbjct: 48 FVCERVCTSKRMLKKVGAFSKDPIPE 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,072,065
Number of Sequences: 37544
Number of extensions: 539686
Number of successful extensions: 1957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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