Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00863
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    31   0.14 
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    30   0.33 
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          29   0.77 
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   1.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   1.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   3.1  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    27   4.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   7.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.4  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    25   9.4  

>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 353 QSTIPLNSQQSFTKDDCACYYNYGHGENGSNRQHDSIFHYKTNSLPAACSINSLG 517
           Q  +P  +Q + T         YGHG N +N+Q++SI H   ++LP    +  +G
Sbjct: 85  QHNLPPETQYAITHRFDPESSTYGHG-NRTNQQNNSILHPDLHTLPGVPQVQLIG 138


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 472 VMKNGIMLTVAAIFTMSIIVIASTVIFSEALLTIERDSGLLLVINLAWFVLKRPILFIFM 293
           V  N + L    + ++SI+ I   VIF      +     L ++  L+WF     +LFI M
Sbjct: 100 VYSNEVPLLFVFVISISIVCIFDLVIFGCLQYNMVSMDDLHVMQRLSWFCASLALLFILM 159

Query: 292 LHNSQHSKA 266
            +    +KA
Sbjct: 160 RYYDFWTKA 168


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 191 KRRHLSYWEVLVMLED*NASRLLSDSLAVLRIVEHEDEENWPLE 322
           K+ HL  W +   L + + S+ L+D  +   I+ H   E+ PLE
Sbjct: 127 KKSHLIKWSIEWCLHESSTSKDLTDEASENTIITHSHPESEPLE 170


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 493 SW*TVCFVMKNGIMLTVAAIFTMSIIVIASTVIFSEALLTIERDSGLLLVINLAWFVLKR 314
           SW     V  N ++     I T+ I ++    +F    L I  D  +LLV ++ W+ ++ 
Sbjct: 42  SWNVSLKVFGNVLLPGFLTIRTVVIFILRIVSLF----LWILADPAILLVQSVYWYFIRA 97

Query: 313 PILFIFML 290
           P  FI M+
Sbjct: 98  PARFILMV 105


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -1

Query: 278 TQQGCHSIVSRHFSLLT*PTLPNKI-DVFSLVKSCHFK 168
           T + CHSI S++  ++T   + NK+ D++SL+K   ++
Sbjct: 668 TAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYE 705


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 699 GQLLDRTRDIKWSITKARAEIRRILLKSQKK 791
           G++ D    +K  I K R E RRI L+ QKK
Sbjct: 792 GEIRDYKMMLKQQIAKEREEERRIELEKQKK 822


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 544 LSPDDVGNQLTLLDLPCFKAIKPEE 618
           LSP D+ N+LT+LDL  F   +P E
Sbjct: 113 LSPSDLTNELTILDL--FHVPRPNE 135


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 466 KNGIMLTVAAIFTMSIIVIASTVIFSEALLTIE 368
           KN + LT AA+F++S I   ST     AL TIE
Sbjct: 159 KNELGLTDAALFSISEIYKPSTAPLVRALQTIE 191


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 482  CLFCNEKWNHVDGCCHFHHVHNCN 411
            CLFC +       CC F+ +  CN
Sbjct: 1842 CLFCGKLLCFQSHCCSFNGIGECN 1865


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 330 HARLITRSSPLSLSIVNKASLKMTVLAITIMDMVKMAATVNMIPF 464
           H RL  R +   +      SL  T+L  +IM +V +  T  + PF
Sbjct: 472 HFRLFIRLALFCVLTTYNVSLSQTILLTSIMSVVFLLQTGALAPF 516


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 557 SSGLSLRAEQTISSQDY*LNKQLVDCLFCNEKWNHV 450
           S G SLRA + IS+    L+ Q   C  C++   HV
Sbjct: 260 SCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHV 295


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 61  FMYI*YLYIFNKIKP 17
           +MY+ Y+Y  NK+KP
Sbjct: 237 YMYLGYVYFLNKLKP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,816
Number of Sequences: 5004
Number of extensions: 61679
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)