Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00863
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -1

Query: 458 NHVDGCCHFHHVHNCNSKHSH 396
           +H+    H HH H     H H
Sbjct: 424 SHIHATPHHHHSHAATPHHQH 444


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 342 ITRSSPLSLSIVNKASLKMTVLAITIMDMVKMAATVNMIPFFITKQTVYQL 494
           I RSS   L+     +LKMTV+ I +  +      V  + ++I + + Y++
Sbjct: 243 IRRSSIGFLTRAKIRTLKMTVIIIAVFFICWTPYYVMSLWYWIDRNSAYKI 293


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 595 NRVSQVMSVDFQHHQDSASGLN 530
           NR+    +  +QH QD  SG++
Sbjct: 84  NRMDMRNATYYQHQQDHGSGMD 105


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 4/14 (28%), Positives = 12/14 (85%)
 Frame = +2

Query: 290 EHEDEENWPLEDKP 331
           + + +++WP+E++P
Sbjct: 457 QQQQQQHWPMEEEP 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,111
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)