Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00862
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 109 2e-25
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 109 2e-25
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.25
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.34
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.44
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.59
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 1.4
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 27 1.4
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.4
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 5.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 5.5
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 7.2
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.2
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 7.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.2
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 9.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 9.5
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.5
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 9.5
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 109 bits (263), Expect = 2e-25
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 4 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 183
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ +
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192
Query: 184 EVHRAHIFGLHVAEYMRSLEQDDE 255
E R +I+G HVAEYM L DDE
Sbjct: 193 ETLRKYIYGGHVAEYMEMLIDDDE 216
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 255 DSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLT 428
+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + ++ +RKLT
Sbjct: 217 ERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLT 276
Query: 429 LAERKNRIKQK 461
ERK R K
Sbjct: 277 AEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 109 bits (263), Expect = 2e-25
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 4 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 183
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ +
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192
Query: 184 EVHRAHIFGLHVAEYMRSLEQDDE 255
E R +I+G HVAEYM L DDE
Sbjct: 193 ETLRKYIYGGHVAEYMEMLIDDDE 216
Score = 48.8 bits (111), Expect = 5e-07
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 255 DSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLT 428
+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + + +RKLT
Sbjct: 217 ERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLT 276
Query: 429 LAERKNRIKQK 461
ERK R K
Sbjct: 277 AEERKERFNAK 287
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.9 bits (64), Expect = 0.25
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +3
Query: 261 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 440
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 441 KNRIKQKKASFIKRLQAQAEA*ISKYN 521
+ +Q+K +IK+++ +A I K+N
Sbjct: 449 DRQKEQRKKEYIKKVKKEAS--IKKHN 473
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 312 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 470
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 327 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 497
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 339 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 470
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 315 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLA----ERKNRIKQKKASFIKR 482
EAI + EA RA +EL + QKR + + A ER+ R +K +R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRR 847
Query: 483 LQAQAEA*ISK 515
+Q + + IS+
Sbjct: 848 IQQERDEEISR 858
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 193 RAHIFGLHVAEYMRSLEQDDEILSRDN 273
R + GL VAEY R +E D +L DN
Sbjct: 277 RVALTGLTVAEYFRDIEGQDVLLFIDN 303
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 372 KELKKDSVKQKRWNKRKLTLAER--KNRIKQKKASFIKRLQAQAEA*ISKYNF 524
+E + DS + ++ + + AE+ KNR +KKAS ++ LQ EA +S F
Sbjct: 553 REDENDSEQLDHFDMKSILKAEKFKKNRKLKKKASNLEGLQEGFEADVSDPRF 605
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 309 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 422
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 300 TADAIEAIYKKAHEAIRADPSHKKKELK 383
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 315 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 494
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A K + Q
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 330 KAHEAIRADPSHKK-KELKKDSVKQKRWNKRK-LTLAERKNRIKQKKASFIKRLQAQ 494
K E I + K+ +ELKK K+K+ +K+K L LA+ + R ++++A + AQ
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEER-QRREAERLAEQAAQ 626
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 327 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 482
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 372 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA*ISKYNF*SKKKK 542
++L K S+++K K+K + A ++ + +KKA ++ Q + E + K K KK
Sbjct: 166 EQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMR--QQRREENLKKRRESKKSKK 220
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 327 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 467
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 366 KKKELKKDSVKQKRWNKRK 422
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 354 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 461
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 363 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 470
HKKK+ + S K+K + K ++K ++K K S
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -1
Query: 292 SFMYLLNCLLKE---SHHPVQDFSCIQQHANQ 206
+FM +NCLLK+ S+H S HANQ
Sbjct: 86 AFMRAVNCLLKDDSHSYHVRFQHSINANHANQ 117
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 255 DSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 404
+S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1027 ESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 351 ADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 446
+DP + KK SV +K W +R+ TL +++
Sbjct: 76 SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +3
Query: 294 GVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASF 473
G A+ +IY+ + E IR+ + KKE D +K + ++ R + K S
Sbjct: 399 GSIAEMKSSIYESSQEGIRSSSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSM 455
Query: 474 IKRLQAQAEA*ISKYNF*SKKKK 542
+ L+ E + Y+ +K +
Sbjct: 456 VS-LELTNEMALEFYDLNTKASR 477
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 315 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 446
E I + + H++K+ ++ V++K KRK +R+N
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 48 CRLSTHHYWCSCLWSYEGCC*RWPQCSSF 134
C ST+ + CLW++ C +P+ SS+
Sbjct: 123 CSASTNSHSYDCLWNFS--CNSFPEYSSY 149
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 327 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 458
KK H A + P +KK+LKK S N + +A +Q
Sbjct: 4 KKGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQ 47
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 336 HEAIRADPSHKKKELKKDSVKQKRWNKRK 422
HE RA +KKE + ++V++KR NK++
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENKKR 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,722
Number of Sequences: 5004
Number of extensions: 43069
Number of successful extensions: 220
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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