Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00860
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   101   6e-23
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    96   3e-21
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.83 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   1.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   5.8  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   7.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.7  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   7.7  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.7  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   7.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.7  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  101 bits (242), Expect = 6e-23
 Identities = 49/71 (69%), Positives = 56/71 (78%)
 Frame = +1

Query: 43  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 222
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 223 FKTNFGGGKST 255
            +T+FGGG+ST
Sbjct: 60  LRTHFGGGRST 70



 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 GFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 404
           GFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 71  GFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 44/71 (61%), Positives = 54/71 (76%)
 Frame = +1

Query: 43  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 222
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 223 FKTNFGGGKST 255
            +T++GGG++T
Sbjct: 60  LRTHYGGGRTT 70



 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = +3

Query: 246 QVNGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 404
           +  GFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 68  RTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 294 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 392
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 160 EIREKLAKMYKVTPDVVFVFGFKTNFGG 243
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 275 VVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLL 150
           ++D S  +DLPPP  ++KP    T      +L   +R S +L
Sbjct: 565 MMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 75  ASANSRCSFTHFELFSII 22
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 VSRQTSEVASQRIRFDLRHTRSGQEVRAQAQVS 319
           ++ +TSE +S+   FDL   +S    R Q+ VS
Sbjct: 1   MAERTSESSSESASFDLEKQQSNHHDRYQSSVS 33


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 288 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 392
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 242 PPKFVLKPNTNTTSGVTLYILASFS 168
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 294 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 395
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 SRISVLLTVGFPGCKTSQTICLRANNL 90
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 336 EKKRPTRKQRKERKNRMKKVRGT 404
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 51  RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 167
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,410
Number of Sequences: 5004
Number of extensions: 39881
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)