Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00860
(472 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 99 1e-21
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.001
AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical... 30 0.96
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 2.9
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 2.9
U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine rece... 28 3.9
Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.8
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.8
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 6.8
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 6.8
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 6.8
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.8
U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine rece... 27 6.8
AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical ... 27 6.8
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 27 9.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 99.1 bits (236), Expect = 1e-21
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +1
Query: 61 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 240
TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ G
Sbjct: 6 TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65
Query: 241 GGKS 252
GGKS
Sbjct: 66 GGKS 69
Score = 83.8 bits (198), Expect = 6e-17
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +3
Query: 222 FQDKLRRWQVNGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 398
F+ K+ + GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KKVR
Sbjct: 60 FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVR 119
Query: 399 GT 404
GT
Sbjct: 120 GT 121
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 112 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 210
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 255 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 383
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical
protein Y105E8A.28 protein.
Length = 210
Score = 29.9 bits (64), Expect = 0.96
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 227 RQTSEVASQRIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 397
RQ S++ ++ I H R+ + R + V PP+ E E A A EQN GP
Sbjct: 13 RQLSDLLAEAIGI---HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 267 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 392
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 267 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 392
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine
receptor, class x protein74 protein.
Length = 323
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -3
Query: 173 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 33
FS + V L V GF + ICL RA NN++V+ + I P+L+L+Y
Sbjct: 22 FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71
>Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical
protein F57G8.3 protein.
Length = 331
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 464 IHLYLAFTSLLGGRTYFRFLGTADL-LHSV---LTFFTLFARGPLLLVQAVAG*PVLGLE 297
+HL+ A+ + + + T+ L LH V + FFT F P+L++ AG P+ L
Sbjct: 29 VHLFGAYIIIFKTPDKMKSVRTSMLSLHLVGAFVDFFTSFLTAPVLILPVCAGYPLGVLG 88
Query: 296 LLG 288
+LG
Sbjct: 89 MLG 91
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 27.1 bits (57), Expect = 6.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 237 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASAN 64
E+C + T+ H +LVH GE + D FS N+ HL + +
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVCD 598
Query: 63 SRCSFTHFELFSIIRRLHA 7
++ FT + + +RLHA
Sbjct: 599 AK--FTQYVHLRLHKRLHA 615
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 296 LLGQIECVVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRIS 159
++ + C++ S V + PP V+ P T TT + + A SR++
Sbjct: 1245 VINSVSCII--STGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 296 LLGQIECVVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRIS 159
++ + C++ S V + PP V+ P T TT + + A SR++
Sbjct: 1245 VINSVSCII--STGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 296 LLGQIECVVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRIS 159
++ + C++ S V + PP V+ P T TT + + A SR++
Sbjct: 1245 VINSVSCII--STGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 296 LLGQIECVVDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRIS 159
++ + C++ S V + PP V+ P T TT + + A SR++
Sbjct: 1245 VINSVSCII--STGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 336 EKKRPTRKQRKERKNRMKKVR 398
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>U55366-8|AAZ91347.1| 287|Caenorhabditis elegans Serpentine
receptor, class x protein73 protein.
Length = 287
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -3
Query: 128 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 33
KTS ICL RA NN++V+ ++ PSL+L+Y
Sbjct: 4 KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38
>AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical
protein W05G11.4 protein.
Length = 634
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 243 WQVNGFALIYDTLDLAKKFEPKHRLARHGLYEKK 344
W ++ ALI + ++ PK + ++HG+Y+ K
Sbjct: 154 WLLSAMALIAEKPEVLDAIIPKKQYSKHGVYQVK 187
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 390 SSFCSYVLYAVCAWASSSRTGRGGLTC 310
+SFC+Y L+ CA + + GG C
Sbjct: 99 ASFCNYPLFVFCAGSIGLGSWMGGCVC 125
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 126 NIANHLLARQQSVGHELASANSRCSFTHFELFSI 25
N NH+L++ + V H ++ ANSR + E+ +I
Sbjct: 784 NEENHILSQTRPVSHPVSRANSRPTTPGLEIKTI 817
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,002
Number of Sequences: 27780
Number of extensions: 229860
Number of successful extensions: 779
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -