Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00858
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    29   1.0  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   5.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   7.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   7.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   7.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   7.2  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +2

Query: 362 ETVFTLIFIGNFTLGM-NP*NYACAINESTI--IKAGSLTFGQLLVNQKNEL*LCIPLAV 532
           +TVF L+F   FTL + +P  YA  I E+ I   +    T  +L  N+   L L + L  
Sbjct: 222 DTVFRLLFCRGFTLPLSSPEQYAYIIWENGIGTTETQEKTTKELAFNRIEVLRLLLVLIS 281

Query: 533 TKLFGTTSWMDDRLTINLYLMQVLNRIL*RRRLYS 637
            +L+ ++      LT   YL  V N+ L    LYS
Sbjct: 282 KRLYRSSEVASHTLT---YLTCVANKQLILVFLYS 313


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 563 PSKMSFRRVL*LPMEYKVIIRFSDLPII 480
           PS +SF R + L + +++ IRFS  P+I
Sbjct: 258 PSLLSFARSVLLTVSFEIRIRFSAEPLI 285


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 267 RICTQRQY*LTLICFFFNTIHSCRKHFQY 353
           RIC+   +   L+C F NTI    KH  Y
Sbjct: 41  RICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 267 RICTQRQY*LTLICFFFNTIHSCRKHFQY 353
           RIC+   +   L+C F NTI    KH  Y
Sbjct: 41  RICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 267 RICTQRQY*LTLICFFFNTIHSCRKHFQY 353
           RIC+   +   L+C F NTI    KH  Y
Sbjct: 41  RICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 267 RICTQRQY*LTLICFFFNTIHSCRKHFQY 353
           RIC+   +   L+C F NTI    KH  Y
Sbjct: 41  RICSYIMFGFALVCLFTNTIVFFFKHTIY 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,010
Number of Sequences: 5004
Number of extensions: 66586
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)