Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00858
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 733 SLNYKIYIYYYQRWQSVHLDKKMLLTCQYRLI 638
           S+ Y   I++ Q W+   L     +T +YRL+
Sbjct: 79  SMTYAADIFFAQTWKDNRLRLPENMTSEYRLL 110


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 294 VNIDAAYIFLLRCSIFLNN 238
           VNID  Y +  +C   +NN
Sbjct: 456 VNIDKLYTYFDKCDTLINN 474


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 294 VNIDAAYIFLLRCSIFLNN 238
           VNID  Y +  +C   +NN
Sbjct: 456 VNIDKLYTYFDKCDTLINN 474


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 662 IDMSIQIDLNIIVSFKEYG 606
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,044
Number of Sequences: 438
Number of extensions: 4872
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)