Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00857X
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 136 2e-33
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 42 5e-05
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 31 0.089
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 26 3.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 3.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.4
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 26 4.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 5.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.7
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 136 bits (330), Expect = 2e-33
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVG 435
+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L++EG++VKRT IVDVPVG
Sbjct: 69 ISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVG 128
Query: 436 EQILGRVVDPLGNPIDGKGPIDT 504
E +LGRVVD LGNPIDGKGPI T
Sbjct: 129 EALLGRVVDALGNPIDGKGPIKT 151
Score = 45.6 bits (103), Expect = 5e-06
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 155 EISTILEERILGAAPKADLEETGRVLSIGDGIA 253
E+ +ILEERI GA +A + E+GRVLSIGDGIA
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIA 67
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +1
Query: 352 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDPLGNPIDGKGPI 498
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPI 155
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 31.5 bits (68), Expect = 0.089
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 406 TGAIVDVPVGEQILGRVVDPLGNPIDGKGP 495
TG + +PV E +LGRV + G PID KGP
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP 120
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 244 WYRSVYGLKNIQAEEMVEFSSGLKGMALNLEPD 342
WY S++G N++A + E + ++ L PD
Sbjct: 510 WYSSLHGKANLKAATIKEIVNEIEAWRQQLSPD 542
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 501 VDWSLAVNRVTQRIYYTPKDLLSNGNVYDSTSTLDNISFLDKLVI 367
+ + +A N + + +Y TP+ L SNG + +L L ++VI
Sbjct: 606 ISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVI 650
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 330 VKGHSLET*GELHHLLSLDVLQAINRAIPSPMLKTRPV 217
++ H E ++H L + VL+A + I P+L++ P+
Sbjct: 506 MREHQFEPTAKMHELQMMGVLEAESAKISIPLLQSDPL 543
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 467 KGSTTRPRICSPTGTSTIAP 408
+ TRPR+ +P+ +ST+ P
Sbjct: 51 RNRNTRPRVSAPSSSSTVVP 70
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 438 LSNGNVYDSTSTLDNISFLDKLVIT 364
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 114 HLANYMSQPPTKLPRSPPSSKRGSLEP 194
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 102 QWPWHLANYMSQPPTKLPRSPPSSK 176
Q P H N+ S PP P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,157
Number of Sequences: 5004
Number of extensions: 48084
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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