Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00857X
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 151 5e-37
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 151 5e-37
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 71 2e-15
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 78 4e-15
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 44 8e-05
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 39 0.003
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 33 0.11
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 31 0.44
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 3.1
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 3.1
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 29 3.1
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 29 3.1
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 28 4.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 5.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 5.4
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 5.4
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 5.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 5.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 5.4
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z30662-8|CAA83136.2| 278|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z30662-3|CAE52907.1| 297|Caenorhabditis elegans Hypothetical pr... 27 7.1
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 27 7.1
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 27 7.1
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 7.1
AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear recep... 27 7.1
AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormo... 27 7.1
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.4
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 27 9.4
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 27 9.4
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 9.4
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 27 9.4
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 151 bits (365), Expect = 5e-37
Identities = 70/81 (86%), Positives = 77/81 (95%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVG 435
VYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG
Sbjct: 42 VYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVG 101
Query: 436 EQILGRVVDPLGNPIDGKGPI 498
+ +LGRVVD LGNPIDGKGPI
Sbjct: 102 DGLLGRVVDALGNPIDGKGPI 122
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 152 AEISTILEERILGAAPKADLEETGRVLSIGDGIA 253
+E+S ILEERILG +LEETG+VLSIGDGIA
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIA 40
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 151 bits (365), Expect = 5e-37
Identities = 70/81 (86%), Positives = 77/81 (95%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVG 435
VYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG
Sbjct: 69 VYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVG 128
Query: 436 EQILGRVVDPLGNPIDGKGPI 498
+ +LGRVVD LGNPIDGKGPI
Sbjct: 129 DGLLGRVVDALGNPIDGKGPI 149
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 152 AEISTILEERILGAAPKADLEETGRVLSIGDGIA 253
+E+S ILEERILG +LEETG+VLSIGDGIA
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIA 67
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 70.5 bits (165), Expect(2) = 2e-15
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGN 369
VYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVV GN
Sbjct: 69 VYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGN 106
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 152 AEISTILEERILGAAPKADLEETGRVLSIGDGIA 253
+E+S ILEERILG +LEETG+VLSIGDGIA
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIA 67
Score = 28.7 bits (61), Expect(2) = 2e-15
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 466 LGNPIDGKGPI 498
LGNPIDGKGPI
Sbjct: 104 LGNPIDGKGPI 114
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/41 (85%), Positives = 39/41 (95%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 378
VYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+
Sbjct: 69 VYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKI 109
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 152 AEISTILEERILGAAPKADLEETGRVLSIGDGIA 253
+E+S ILEERILG +LEETG+VLSIGDGIA
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIA 67
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +1
Query: 352 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDPLGNPIDGKGPIDTRS 510
+ + G + L++ G V TG + +PVG + LGR+++ +G PID +GPI +++
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKN 171
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 316 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDPLGNPIDGKG 492
G L + + V VF G + + I + TG I+ PV E +LGR+ + G PID KG
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPID-KG 124
Query: 493 P 495
P
Sbjct: 125 P 125
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 310 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDPLGNPI 480
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 432
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 433 GEQILGRVVDP 465
++G+ V P
Sbjct: 691 DTSLIGKSVVP 701
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 432
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 433 GEQILGRVVDP 465
++G+ V P
Sbjct: 691 DTSLIGKSVVP 701
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 441
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 442 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 498
Query: 442 ILGRVVDPLGNPIDGKGP 495
+ R+ +P GN + GP
Sbjct: 499 CILRIRNPWGNEQEWNGP 516
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 441
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 467 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 523
Query: 442 ILGRVVDPLGNPIDGKGP 495
+ R+ +P GN + GP
Sbjct: 524 CILRIRNPWGNEQEWNGP 541
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 441
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 488 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 544
Query: 442 ILGRVVDPLGNPIDGKGP 495
+ R+ +P GN + GP
Sbjct: 545 CILRIRNPWGNEQEWNGP 562
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 406 TGAIVDVPVGEQILGRVVDPLGNPIDGKGP 495
TG I PV +LGR+ + G PID KGP
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPID-KGP 137
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -3
Query: 519 PSYGSRVDWSLAVNRVTQRIYYTPKDLLSNGNVYDS---TSTLDN-ISFLDKLVITKYYH 352
P+ DW++ + + ++ +Y+T LL+ D T T +N F+ K V +YY
Sbjct: 87 PNANRHADWAIQIKKPSKYLYHTSFALLAAFAHRDQIIVTLTSENQFKFVFKTVYCRYYD 146
Query: 351 TH 346
H
Sbjct: 147 CH 148
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 49
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 138 PPTKLPRSPPSSKRGSLEPRPR 203
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
>Z30662-8|CAA83136.2| 278|Caenorhabditis elegans Hypothetical
protein T16H12.3a protein.
Length = 278
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -3
Query: 519 PSYGSRVDWSLAVNRVTQRIYYTPKDLLSNGNVYDSTSTLDNISFLDKLVITKYYHTHIV 340
P Y VD S + R+Y+ K+ ++NG+ ++ +S + K V+ ++ +
Sbjct: 54 PIYSKCVDSSQLIAESASRVYHDAKEYMNNGSATEA-ELYRFVSSILKEVLEPIFNPKEI 112
Query: 339 RFQVKG 322
R +KG
Sbjct: 113 RNVLKG 118
>Z30662-3|CAE52907.1| 297|Caenorhabditis elegans Hypothetical
protein T16H12.3b protein.
Length = 297
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -3
Query: 519 PSYGSRVDWSLAVNRVTQRIYYTPKDLLSNGNVYDSTSTLDNISFLDKLVITKYYHTHIV 340
P Y VD S + R+Y+ K+ ++NG+ ++ +S + K V+ ++ +
Sbjct: 54 PIYSKCVDSSQLIAESASRVYHDAKEYMNNGSATEA-ELYRFVSSILKEVLEPIFNPKEI 112
Query: 339 RFQVKG 322
R +KG
Sbjct: 113 RNVLKG 118
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 530 LNTDPHTDLVSIGPLPSIGLPKGS-TTRPRICSP 432
L +DPH+ VSI P+PSI S +T P SP
Sbjct: 316 LPSDPHSARVSIQPIPSIISENSSRSTTPVKASP 349
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 530 LNTDPHTDLVSIGPLPSIGLPKGS-TTRPRICSP 432
L +DPH+ VSI P+PSI S +T P SP
Sbjct: 359 LPSDPHSARVSIQPIPSIISENSSRSTTPVKASP 392
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 138 PPTKLPRSPPSSKRGSLEPRPR 203
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
>AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear receptor
NHR-59 protein.
Length = 416
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 561 ADTLPE*YVAP*YRPSYGSRVDWSLAVNRVTQRIYYTPKDLLSNGNVYD 415
AD L Y+ P Y SR+ + VN + R+ + K+ LS +++
Sbjct: 352 ADDLHSYYIKEMRLPVYSSRIQKMMKVNNMVLRVMWERKEKLSIARMFN 400
>AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 59 protein.
Length = 416
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 561 ADTLPE*YVAP*YRPSYGSRVDWSLAVNRVTQRIYYTPKDLLSNGNVYD 415
AD L Y+ P Y SR+ + VN + R+ + K+ LS +++
Sbjct: 352 ADDLHSYYIKEMRLPVYSSRIQKMMKVNNMVLRVMWERKEKLSIARMFN 400
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 99 PQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPR 203
P P ANY P + R+PPSS + +P PR
Sbjct: 264 PGAPGKDANYCPCPQRQDDRTPPSSGTSAPQPPPR 298
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 324 GHSLET*GELHHLLSLDVLQAINRAI-PSPMLKTRPVS 214
G SLE+ L +L LD+L AI A P P L VS
Sbjct: 377 GRSLESVNPLENLTQLDILTAIRNATGPRPALFVPEVS 414
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 324 GHSLET*GELHHLLSLDVLQAINRAI-PSPMLKTRPVS 214
G SLE+ L +L LD+L AI A P P L VS
Sbjct: 377 GRSLESVNPLENLTQLDILTAIRNATGPRPALFVPEVS 414
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 90 WRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRLI 209
W P PW + +PP LP PP + + +P+++
Sbjct: 59 WDRPPPPWRRPPWHRRPPWGLPPPPPPPEPEPQQDQPQVM 98
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 324 GHSLET*GELHHLLSLDVLQAINRAI-PSPMLKTRPVS 214
G SLE+ L +L LD+L AI A P P L VS
Sbjct: 377 GRSLESVNPLENLTQLDILTAIRNATGPRPALFVPEVS 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,694
Number of Sequences: 27780
Number of extensions: 288909
Number of successful extensions: 1006
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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