Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00857X
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -2

Query: 355 PHPHCQVPS*GPFP*DLRRTPPSPQPGCSSSHKQS 251
           PH   Q P  G  P   +  PP   PG   S   S
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 459 YYTPKDLLSNGNVYDSTSTLDNISFLDK 376
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 459 YYTPKDLLSNGNVYDSTSTLDNISFLDK 376
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 456 YTPKDLLSNGNVYDSTSTLDNISF 385
           YTP+ L   GNV + +S   N  F
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKF 379


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 456 YTPKDLLSNGNVYDSTSTLDNISF 385
           YTP+ L   GNV +  S   N  F
Sbjct: 356 YTPEGLNMLGNVIEGNSDSINTKF 379


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 200 KADLEETGRVLSIGDG 247
           K D+EETGR    G G
Sbjct: 72  KTDIEETGRGKGRGHG 87


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 198 GAAPRILSSRMVEISAALWVVETCS 124
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 198 GAAPRILSSRMVEISAALWVVETCS 124
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 198 GAAPRILSSRMVEISAALWVVETCS 124
           G+   ++  R+ + +A  WV+  CS
Sbjct: 61  GSKKALMKERIRQKAAGHWVIHPCS 85


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 562 RRYTPGMIRGALI 524
           R Y PGMI GA I
Sbjct: 180 RTYEPGMICGATI 192


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 507 IRMRVGIKAPRIIPGV 554
           IRMR+GI    ++ GV
Sbjct: 581 IRMRIGIHTGMVLAGV 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,102
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)