Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00856
(460 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 91 1e-18
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 91 1e-18
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 91 1e-18
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 91 1e-18
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 91 1e-18
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 91 1e-18
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 91 1e-18
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 91 1e-18
AJ404607-1|CAB94913.2| 264|Homo sapiens hypothetical protein pr... 35 0.15
AK126665-1|BAC86634.1| 1012|Homo sapiens protein ( Homo sapiens ... 31 1.4
AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting pro... 31 1.4
AB051471-1|BAB21775.1| 762|Homo sapiens KIAA1684 protein protein. 31 1.4
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 29 7.7
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 91.5 bits (217), Expect = 1e-18
Identities = 42/66 (63%), Positives = 56/66 (84%)
Frame = -1
Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MRYVA+YLLA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 274 KLSSMP 257
KL+S+P
Sbjct: 61 KLASVP 66
>AJ404607-1|CAB94913.2| 264|Homo sapiens hypothetical protein
protein.
Length = 264
Score = 34.7 bits (76), Expect = 0.15
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 408 PRQLPLTLRRS-----SAPSVSKLTVRSLRK*SLSSTARMLNNLLRPDVRSCRQC 259
P QLPL+LRR S PS S +RSL S +S++R + RSC +C
Sbjct: 66 PAQLPLSLRRRCSRPRSRPSSSSRAIRSLWSRSRTSSSRWFTSDTSSSSRSCSRC 120
>AK126665-1|BAC86634.1| 1012|Homo sapiens protein ( Homo sapiens
cDNA FLJ44709 fis, clone BRACE3019570, highly similar
to Rattus norvegicus SNAP-25-interacting protein (SNIP).
).
Length = 1012
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 415 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 257
G TP V+K +S E D E+ + +T+ + KD+ +L+ + E L ++P
Sbjct: 765 GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 818
>AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting protein
protein.
Length = 1183
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 415 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 257
G TP V+K +S E D E+ + +T+ + KD+ +L+ + E L ++P
Sbjct: 893 GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 946
>AB051471-1|BAB21775.1| 762|Homo sapiens KIAA1684 protein protein.
Length = 762
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 415 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 257
G TP V+K +S E D E+ + +T+ + KD+ +L+ + E L ++P
Sbjct: 472 GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 525
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 29.1 bits (62), Expect = 7.7
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +3
Query: 246 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 425
S +T + + S S STS P S + P+AS+ LR STS +T
Sbjct: 5449 SKATPLMSTTSTLGDTSVSTSTPNISQTNQIQTEPTASLSPRLRESSTSEKTSSTTETNT 5508
Query: 426 ASKYAAT 446
A Y T
Sbjct: 5509 AFSYVPT 5515
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,751,292
Number of Sequences: 237096
Number of extensions: 627368
Number of successful extensions: 1990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -