Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00856
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    73   8e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    70   9e-13
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    31   0.30 
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    27   5.0  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    27   6.6  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 36/65 (55%), Positives = 46/65 (70%)
 Frame = -1

Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
           MRYV+AYLLAVLGG   P   D++ ILS+VG++AD E  K V++ L GK VE+LIA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 274 KLSSM 260
            L S+
Sbjct: 61  GLVSV 65


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 69.7 bits (163), Expect = 9e-13
 Identities = 31/66 (46%), Positives = 45/66 (68%)
 Frame = -1

Query: 454 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
           M+Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 274 KLSSMP 257
           KLSS+P
Sbjct: 61  KLSSVP 66


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 409 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 290
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 409 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 290
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 246 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 425
           SAST + +  S  +A +  T+ PL++  T  + +    + T      T+      L P+T
Sbjct: 116 SASTSVVNDSSNTSATATQTTTPLTTTFTLENATTKEKVTTPTPPPPTTTTPTTTLKPTT 175

Query: 426 ASKYAAT 446
           + +  +T
Sbjct: 176 SPEKHST 182


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 SCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 440
           S ST  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 436 SISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,359,960
Number of Sequences: 27780
Number of extensions: 100839
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)