Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00855
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.085
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   7.4  
UniRef50_Q6Z0G5 Cluster: Cell wall protein-like; n=1; Oryza sati...    33   9.7  
UniRef50_A7I6Y8 Cluster: Putative uncharacterized protein precur...    33   9.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.5 bits (88), Expect = 0.085
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -2

Query: 422 FLLPRCVDDLTAHPVLSGYWNP 357
           FLL R VD+LTAH VLSGYW+P
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 226 WHLPVRTHKRSYHQ 185
           W+LP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q6Z0G5 Cluster: Cell wall protein-like; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Cell wall protein-like -
           Oryza sativa subsp. japonica (Rice)
          Length = 431

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 288 TAAPPFKPKRIMLHGRNRRGGGTYPCG-LTRGPTTSKKLLFNVAN*R*RSKLLC 130
           ++  P + +R+ + GR R   G++P   L+RG TTS +LL      R  S  LC
Sbjct: 59  SSVDPSRRRRLFVAGRRRSSFGSWPLPELSRGRTTSPRLLLLFPRCRPSSSRLC 112


>UniRef50_A7I6Y8 Cluster: Putative uncharacterized protein
           precursor; n=1; Candidatus Methanoregula boonei 6A8|Rep:
           Putative uncharacterized protein precursor -
           Methanoregula boonei (strain 6A8)
          Length = 223

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +1

Query: 13  PADAPHSTSTSTH*YANLIITYPAIINITYFKLIGDIKIAE 135
           P DAP++T+T+T  Y   I+T P I N  YF+ IG+  +++
Sbjct: 110 PTDAPNTTATAT--YPGSILT-PGITNGGYFQKIGNTSLSD 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,436,150
Number of Sequences: 1657284
Number of extensions: 13771397
Number of successful extensions: 25725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25718
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)