Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00855
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    30   0.40 
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    28   1.6  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   6.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.5  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   8.6  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 278 HPSNRNALCFTAEIGGAVAPTRADSQEVLPPVKN 177
           H    N L  T ++GGA+AP     +EV+  V+N
Sbjct: 225 HQGGSNTLQQTKDVGGAIAPAAEVGKEVINEVEN 258


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 240 NRRGGGTYPCGLTRGPTTSKKLLFNV 163
           N      +PCG   G T  KKLLF V
Sbjct: 57  NSSPSACFPCGTALGATFDKKLLFEV 82


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 297 IVTTAAPPFKPKRIMLHGRNRRGGG 223
           I   + PP+  +RI L G  RRG G
Sbjct: 235 IAVRSLPPYIIRRIKLRGEQRRGRG 259


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 494  IISFEWSKSDNKIF*LCQIKNCFFFLLPRCVDDLTAHPV 378
            I +FE+S+ D+ I      +NCF  LL     +L   P+
Sbjct: 1851 IYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGGSPI 1889


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 66  YYYIPCNHKHH 98
           Y+++PC+ KHH
Sbjct: 203 YFFVPCDKKHH 213


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 284 LPHPSNRNALCFTAEIGGAVAPTRADSQEVLPPV 183
           +PH  + +  C++   GG  +   A S+ VLP V
Sbjct: 400 IPHQIHFSGTCYSVAAGGWQSAALAISESVLPEV 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,555
Number of Sequences: 5004
Number of extensions: 57527
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)