Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00854
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    31   0.13 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    29   0.95 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    29   0.95 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   2.2  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   2.2  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    27   3.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   3.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   5.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   8.8  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 8   EVDERGCYEGSGCTERPPETTTAPNYESEYNETFVLPNCDYYG 136
           E+    C EG+GC E  P     PNY   ++   ++PN ++ G
Sbjct: 320 EIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPP-MIPNPEFIG 361


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 647 QLCNGALCAEHASCLYDATIEISYCHCDEGLT 742
           Q+C+G    E+A   YD   E ++CH   G T
Sbjct: 164 QICDGVRGLEYAVYNYDLPSESTFCHPSNGYT 195


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +3

Query: 360 EGYVGDGYECIEQTGTSCNCAANAHCTETPTAELLCVCNTGYHGDGYVCRRISVVQTTRT 539
           +G V DG       GT+  C +     + P    + +   G   D Y    ++ +Q TR 
Sbjct: 186 DGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHTRP 245

Query: 540 VNTTLNAV 563
           ++T  N V
Sbjct: 246 LSTKPNVV 253


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 50  ERPPETTTAPNYESEYNETFVLPNCDYYGCTCPQGYYS 163
           +RPP  T A NY S+ ++ + L + D+YG      +YS
Sbjct: 369 QRPPNVTAAFNYTSDESQ-YSLRDSDHYGFDGSAFHYS 405


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -2

Query: 404 SGLLDAFVSIAHVAFRANAVSEELIALS 321
           +GL + FVS+++  FRA+ + E+ I++S
Sbjct: 11  AGLSNGFVSVSNSQFRADRLDEDAISVS 38


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 474 NTGYHGDGYVCRRISVVQTTRTVNTTLNAVPILPQ--TNTLVSAS 602
           NTG H + Y  R  +V       N   NAV +L    TN+ +SAS
Sbjct: 90  NTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 468 VCNTGYHGDG--YVCRRISVVQTTRTVNTTLNAVPILPQTNTLVSASKDLKRTKMKL 632
           +   G+ G G  Y C+ ++ +   +  +  +N++   P +N +  ASKD + +  KL
Sbjct: 311 LATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHPGSNVIALASKDTRISLWKL 367


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 309 YSTDAESDQFLGHCVCPEGYVGDGYECIEQTGTSCNCAANAHCTETP 449
           Y  D  S  F+          G    C++ TG S NC+++  C  TP
Sbjct: 178 YLDDQSSVLFIATTNKTYSLSGKSLSCLDNTGVSLNCSSS--CKTTP 222


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 549 TLNAVPILPQTNTLVSASKDLKRTKMKLASLTVNCVMARCVLST 680
           T+N      +TN  +  +K +KR K+   +L ++C + + +L T
Sbjct: 103 TMNREANFQRTNEKIQRNKSIKRVKLFHGNLILDCPIPKKLLVT 146


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 84  TNRNITKHSCCLTATITAARAPKATTVSKMRETTICVVLIQATCRPLSPITMTLQS 251
           T+  I K +C L A     +  K+TTV +  +     V I   C+     +M +Q+
Sbjct: 788 TSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQA 843


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 515 FSCTNNSDCEYNAECRPDTATNEYTCQCIEG 607
           F+C   +    N+ECRP T  N    + +EG
Sbjct: 40  FACDKQNTPSPNSECRPLTPLNSPFRRTVEG 70


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 86  ESEYNETFVLPNCDYYGCTCPQGYYSFK---DERNNDLCRVDTGDVPTPITDNND 241
           E  Y    ++  C++ G    +G  S+    +  N +L  VD   VPT   DN+D
Sbjct: 478 EGYYAIDNLIAKCEFLGNRISKGMASWGIKLEMSNGELNIVDMESVPTEAADNSD 532


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 280 FGGQSLSYRPD*SVIVIGDRGRHVACIN 197
           FGG S  Y  D  +I++G R  H++  +
Sbjct: 102 FGGYSFDYTRDGRMILLGGRKGHISAFD 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,938
Number of Sequences: 5004
Number of extensions: 65756
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)