Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00854
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.1  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 218


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 286


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   V  T+ +R+R L  F+   +P    ++ +   F L
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTL 286


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +3

Query: 381 YECIEQT---GTSCNCAANAHCTETPTAELLCVCNTGYHGDGYVCRRISVVQTTRTVNTT 551
           YE I  T    +SC+C       E+   + L VC +  H D       S+    R  N +
Sbjct: 313 YEGISSTPSQASSCSCLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDSMNAVIRNFNES 372

Query: 552 LN 557
            N
Sbjct: 373 EN 374


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 400 PEPAAIVQPTLIVRKRQLRNFYASAIPVTTETATSAAEFQL 522
           PEP   +   +I+R+R L  F+   +P     + +   F L
Sbjct: 215 PEPYIDITFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTL 255


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 560 RPDTATNEYTCQCIEGFKKDQNEACIPDGQLCNGA 664
           RP+    EY C      +K Q E   P+    NG+
Sbjct: 253 RPECVVPEYQCAVKRKEEKAQKEKDKPNSTTMNGS 287


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 270  CPPNAACIADPHQYSTDAESDQFLGHCVCP 359
            C PN  C   P   S +  S + +   +CP
Sbjct: 1695 CAPNRRCPPPPRMGSAEGLSHRGMEDEICP 1724



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 14   DERGCYEGSGCTERPPETTTAPNYESE 94
            +ER  +   G  E+PP  TT     S+
Sbjct: 1070 EERRQHTAEGVPEQPPHDTTCTTLTSQ 1096


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 218 RSRTHGFQHTSSHYSRER 235


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 218 RSRTHGFQHTSSHYSRER 235


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 218 RSRTHGFQHTSSHYSRER 235


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 218 RSRTHGFQHTSSHYSRER 235


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 207 RSRTHGFQHTSSHYSRER 224


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 RTSTRRAQHTARHYTIDR 642
           R+ T   QHT+ HY+ +R
Sbjct: 218 RSRTHGFQHTSSHYSRER 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,884
Number of Sequences: 438
Number of extensions: 5439
Number of successful extensions: 26
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)