Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00853
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 131 7e-32
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 131 7e-32
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 31 0.10
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.9
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.7
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 6.7
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 8.9
SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu... 25 8.9
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 131 bits (316), Expect = 7e-32
Identities = 59/79 (74%), Positives = 70/79 (88%)
Frame = +2
Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 197 EEEVEKIITIMSNPRQYKI 253
EE+E+I+TI+ NP Q+KI
Sbjct: 61 TEELERIVTIIQNPSQFKI 79
Score = 92.7 bits (220), Expect = 3e-20
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +1
Query: 259 WFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH DLRVRGQH
Sbjct: 82 WFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 131 bits (316), Expect = 7e-32
Identities = 59/79 (74%), Positives = 70/79 (88%)
Frame = +2
Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 197 EEEVEKIITIMSNPRQYKI 253
EE+E+I+TI+ NP Q+KI
Sbjct: 61 TEELERIVTIIQNPSQFKI 79
Score = 92.7 bits (220), Expect = 3e-20
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +1
Query: 259 WFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH DLRVRGQH
Sbjct: 82 WFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 343 DLERLKKIRAHRGMRHYWDLRVRGQH 420
D+ RL IR +RGMRH L V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 229 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 119
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 80 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 172
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 216 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 70
I SSS S A + +S+FL+ +L+ + TP N + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 323 WIQNSVKIWRGSRRFALTEGCDITGTFV-CVVSTLRLLA 436
W+ +S ++RG L + C I GT V C V L LA
Sbjct: 102 WVGSSKSLYRGGAASVLIDYC-IVGTMVFCTVYALGELA 139
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 246 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 127
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 312 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 455
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 85
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 277 FAYLGTSLYLILPRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVG 137
FA S+ +LP + S +N+FF +S I V F +G
Sbjct: 3 FAQFSHSITNLLPSLSMASSTIYNIFFRRNSSFYATIFVSAFFAKIG 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,270
Number of Sequences: 5004
Number of extensions: 40740
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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