Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00853
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 117 5e-27
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 106 9e-24
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 105 3e-23
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 85 2e-17
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 35 0.045
03_01_0404 + 3138624-3140096 31 0.55
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.2
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.2
08_02_0659 - 19758925-19760172 28 5.1
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.1
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.8
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 117 bits (282), Expect = 5e-27
Identities = 47/73 (64%), Positives = 68/73 (93%)
Frame = +2
Query: 35 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 214
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 215 IITIMSNPRQYKI 253
++T+++NPRQ+K+
Sbjct: 63 LMTVVANPRQFKV 75
Score = 97.1 bits (231), Expect = 7e-21
Identities = 41/55 (74%), Positives = 48/55 (87%)
Frame = +1
Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYW LRVRGQH
Sbjct: 77 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 106 bits (255), Expect = 9e-24
Identities = 51/95 (53%), Positives = 72/95 (75%), Gaps = 16/95 (16%)
Frame = +2
Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 181
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 182 -----------AGECTEEEVEKIITIMSNPRQYKI 253
AGE T EE+E+++T+++NPRQ+K+
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKV 95
Score = 97.1 bits (231), Expect = 7e-21
Identities = 41/55 (74%), Positives = 48/55 (87%)
Frame = +1
Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYW LRVRGQH
Sbjct: 97 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 105 bits (251), Expect = 3e-23
Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 18/97 (18%)
Frame = +2
Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 181
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 182 -------------AGECTEEEVEKIITIMSNPRQYKI 253
AGE T EE+E+++T+++NPRQ+K+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKV 97
Score = 97.1 bits (231), Expect = 7e-21
Identities = 41/55 (74%), Positives = 48/55 (87%)
Frame = +1
Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYW LRVRGQH
Sbjct: 99 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/55 (69%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYW LRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 34.7 bits (76), Expect = 0.045
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 337 REDLERLKKIRAHRGMRHYWDLRVRGQ 417
R +ERLK+IR +RG+RH L VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 289 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 387
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 350 RGSRRFALTEGCDITGTFVCVVSTLRLLAGEEELLVY 460
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 347 WRGSRRFALTEGCDITGTFVCVVSTLRLLAGEEELL 454
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>08_02_0659 - 19758925-19760172
Length = 415
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 340 EDLERLKKIRAHRGMRHYWD 399
+D+ER+K++ H G+ +WD
Sbjct: 359 DDVERIKRVERHDGLGGHWD 378
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 162 SAFLRTMLEYLRPTPLIAVIANIT 91
S+FL TM EY+R P A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 100 CDDGYQRCWPEVLQHCSQKSR 162
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,902,617
Number of Sequences: 37544
Number of extensions: 263716
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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