Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00853
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 123 9e-29
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical pr... 27 8.0
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 123 bits (296), Expect = 9e-29
Identities = 54/79 (68%), Positives = 69/79 (87%)
Frame = +2
Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 197 EEEVEKIITIMSNPRQYKI 253
EE+ +KI+TIM NP QYKI
Sbjct: 61 EEDFDKIVTIMQNPSQYKI 79
Score = 97.5 bits (232), Expect = 5e-21
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +1
Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDLRVRGQH 420
+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR HRG+RHYW LRVRGQH
Sbjct: 81 NWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 338 VKIWRGSRRFALTEGCDITGTFVCVVSTLRLLAGEEELLVYQRRS 472
+K +R + AL +TG + + +TL LLA LL QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181
>Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 210 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 254
>Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 210 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 254
>Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical
protein F09A5.4e protein.
Length = 324
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 184 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 228
>Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical
protein F09A5.4d protein.
Length = 314
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 174 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 218
>Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical
protein F09A5.4b protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 201 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 245
>Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical
protein F09A5.4a protein.
Length = 300
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 265 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWDL 402
++RQ++I KY + N + +++ L L H ++H WD+
Sbjct: 160 MSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLFHCMGHMYLKH-WDV 204
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 100 CDDGYQRCWPEVLQHCS 150
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,931
Number of Sequences: 27780
Number of extensions: 230677
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -