Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00852
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    33   0.16 
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    33   0.16 
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    29   3.3  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   3.3  
Z98877-13|CAB63410.2|  254|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lecti...    28   7.7  

>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +2

Query: 329 ASEEQRKDYIIFEKWGEQGDL---WLSAAPRLKDFNEDFQIVIEGIRGSSFMSDLAIDDI 499
           + E  +KD+ +  K G +G L    +++ PR++   ED+ +++E ++ S+ + D++ D +
Sbjct: 336 SEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYSLILEALKDSTKV-DMSPDGL 394

Query: 500 SV 505
            +
Sbjct: 395 QI 396


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +2

Query: 329 ASEEQRKDYIIFEKWGEQGDL---WLSAAPRLKDFNEDFQIVIEGIRGSSFMSDLAIDDI 499
           + E  +KD+ +  K G +G L    +++ PR++   ED+ +++E ++ S+ + D++ D +
Sbjct: 533 SEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYSLILEALKDSTKV-DMSPDGL 591

Query: 500 SV 505
            +
Sbjct: 592 QI 593


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 616 CGCDGDCVIYGYCCQDFVDLCIEKD 690
           C CD  CV  G CC D+  +C  +D
Sbjct: 219 CYCDEHCVTLGDCCSDYTFVCPPRD 243


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 493 RYFRVGGQ--KCVDAAAHAIT---PSPYKADSCVGRCFQNITITRGCGC 624
           RY R+GG+  KCV   +       P  Y  D C+  C+Q+  + + C C
Sbjct: 693 RYTRLGGRYGKCVKKPSEVKNYYYPGAYTTDGCLRTCYQD-RMKQECNC 740


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = +2

Query: 227  EGRMFSALLYMYGRSLGGLRVYQKPDSVDLMTMLASEEQRKDYI-------IFEKWGEQG 385
            E    S+   +  R  G +R Y  PDS  L+  L + E+ K  +       +FE++G + 
Sbjct: 817  ENTKVSSSFELKSRRKGFIR-YSTPDSEQLVAALDAVEKEKSKLGDDATRRVFEQFGHKN 875

Query: 386  DLWLSAAPRLKDFN 427
             +WL     +  F+
Sbjct: 876  PIWLETVKLVSSFD 889


>Z98877-13|CAB63410.2|  254|Caenorhabditis elegans Hypothetical
           protein Y69H2.13 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 493 RYFRVGGQ--KCVDAAAHAIT---PSPYKADSCVGRCFQNITITRGCGC 624
           RY R+GG+  KCV   +       P  Y  D C+  C+Q+  + + C C
Sbjct: 64  RYTRLGGRYGKCVKKPSEVKNYYYPGAYTTDGCLRTCYQD-RMQQECQC 111


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +1

Query: 493 RYFRVGGQ--KCVDAAAHAIT---PSPYKADSCVGRCFQNITITRGCGC 624
           RY R+GG   KC+   +       P  Y  D C+  C+Q+  +   C C
Sbjct: 714 RYTRLGGNYGKCIKKPSEVKNYYYPGAYTTDGCLRTCYQD-RMKEECNC 761


>AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lectin
           protein 85 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 321 VIKSTLSGFWYTLRPPNDLPYI 256
           V +STL+G W TL    +LPY+
Sbjct: 116 VAESTLNGKWQTLAGQKELPYV 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,014
Number of Sequences: 27780
Number of extensions: 334543
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)