Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00852
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          27   0.18 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      27   0.18 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.31 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +2

Query: 185 YSPTFIADLRFGHSEGRMFSALLYMYGRSLGGLRVYQKPDSVDLMTMLASEEQRKDYIIF 364
           Y+    AD+ F H + ++F  LLY+    L     Y    + D+ + +   + +     F
Sbjct: 22  YAGRHTADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMYKDKNVVQKF 81

Query: 365 EKWGEQG 385
             W +QG
Sbjct: 82  LWWYKQG 88


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +2

Query: 185 YSPTFIADLRFGHSEGRMFSALLYMYGRSLGGLRVYQKPDSVDLMTMLASEEQRKDYIIF 364
           Y+    AD+ F H + ++F  LLY+    L     Y    + D+ + +   + +     F
Sbjct: 22  YAGRHTADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMYKDKNVVQKF 81

Query: 365 EKWGEQG 385
             W +QG
Sbjct: 82  LWWYKQG 88


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 9   EEDLCGWIQDEFHDFDWKRLNTKT----PSSFTLTGPWFDHTYGSRGKGHFMYIESTGRF 176
           E +  GW+++ F +FD K +N ++      ++     W    +  RG  + MYIE     
Sbjct: 36  EANTPGWVEESFTNFD-KGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYIE----- 89

Query: 177 INDTARLLSPIYDSAIAKDGCFQLYY 254
           I  T R  S    +A++    F L Y
Sbjct: 90  IKFTTRDCSLFPGNALSCKETFSLLY 115


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 187 VSFMKRPVLSIYMKWPFPLEPY 122
           + F K P+  +  + P P+EP+
Sbjct: 65  IPFAKPPIGPLRFRKPLPIEPW 86


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 187 VSFMKRPVLSIYMKWPFPLEPY 122
           + F K P+  +  + P P+EP+
Sbjct: 65  IPFAKPPIGPLRFRKPLPIEPW 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 380 QGDLWLSAAPRLKDFNE 430
           +GDLW+S    +K F+E
Sbjct: 384 RGDLWISWEEGMKVFDE 400


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 349 GLHYF*KVGRTR*PL 393
           G+HYF KVG    PL
Sbjct: 327 GVHYFTKVGSGEIPL 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,769
Number of Sequences: 438
Number of extensions: 4494
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)