Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00851
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   1.8  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    27   2.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   4.2  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    26   7.3  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.6  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 528 NSTREATRSTKALKKFLSASEYSSYTL 448
           N  RE  R+    KK LSA EYS+++L
Sbjct: 573 NLAREGLRTLVVAKKDLSAEEYSAFSL 599


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 19  LLSKCMKPAVEFLDTDVTGIGNELGGINDSKHFLL 123
           LLS  + P ++ LD    G+  + GG++  K F++
Sbjct: 158 LLSSLIYPGMQALDEQYLGVDVQFGGVDQRKIFVM 192


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 246 VRFQHDVGYNHCRNSHYNFK 187
           VRFQH +  NH   ++Y  K
Sbjct: 104 VRFQHSINANHANQNYYTAK 123


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 699 LVQAAICCSKTHNVSGDAYFSGLSRNTTI 613
           LV+  +   +TH++SG A      RNTTI
Sbjct: 377 LVRKGVPFRETHHISGSAVRMAEERNTTI 405


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 542 QAETYILNMIEE-GE-IYAMINQKDGMVVFLDSPEKYAS 652
           + + Y+ + I+E GE +Y ++N+KDGM     S  K  S
Sbjct: 481 EKKKYVQHSIQENGELVYNLLNEKDGMFFVSGSSGKMPS 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,723
Number of Sequences: 5004
Number of extensions: 78952
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)