Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00851
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 70 3e-12
05_06_0243 - 26639497-26641173 30 1.9
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 3.3
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 29 5.8
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 28 7.6
08_02_0607 + 19285580-19286138,19286734-19287668 28 7.6
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 7.6
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 69.7 bits (163), Expect = 3e-12
Identities = 34/93 (36%), Positives = 54/93 (58%)
Frame = +2
Query: 479 KNFFNAFVERVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPE 658
+ + +E +AS V+L P +AE ++L MIE+GEI+A INQKDGMV F + PE+Y S E
Sbjct: 655 QTYLTLSLEDIASSVQLKTPKEAEMHVLRMIEDGEIHATINQKDGMVSFHEDPEQYKSCE 714
Query: 659 TLCVLEQQMAACTKLHQYIQGMGVQIQVHPQYV 757
+ ++ + L + + + I P Y+
Sbjct: 715 MVEHIDSSIQRLMALSKKLSSIDENISCDPAYL 747
Score = 49.6 bits (113), Expect = 3e-06
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = +1
Query: 1 DLCQLCLLSKCMKPAVEFLDTDVTGIGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRAL 180
D LCLL+K K + L+ D+ + + K LY YYGGMIY +K + AL
Sbjct: 472 DYLLLCLLAKQYKAGLSVLEDDILEV-------DQPKDLFLYCYYGGMIYIGLKKFTIAL 524
Query: 181 ---------YFFEVVVTVPAMVVSHIMLEAYKK 252
Y F VTVP ++ I +EAYKK
Sbjct: 525 DFLHNCLQCYAFLQAVTVPMSSLNAIAVEAYKK 557
Score = 45.2 bits (102), Expect = 6e-05
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 21/101 (20%)
Frame = +3
Query: 234 VGSVQEIILVSLILHGKV-----------LP-MPKYTSQVVCRFLKPLSAPYHDLVAS-- 371
V + ++ ILVSLI +G++ +P PKYTS R LK + Y DL
Sbjct: 552 VEAYKKYILVSLIQNGQIPLLDKGESIFMVPSFPKYTSSTAQRNLKNHAQVYVDLSTCYS 611
Query: 372 -------QHAASKHREIFVRDKNMGLVNQVLNSMYKKNIQR 473
+ + E F D N+GLV QVL+SMYK+NIQR
Sbjct: 612 KGNYSELEEYIQLNAEKFQSDNNLGLVKQVLSSMYKRNIQR 652
>05_06_0243 - 26639497-26641173
Length = 558
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 271 IRDTKIISCTLPT*CGIQPLPEQSLQLQRNTKLYHSFSLPYKSCP 137
+R K+ C +P G L + +LQ RN+ S+ +KSCP
Sbjct: 245 LRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCP 289
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 CQLCLLSKCMKPA-VEFLDTDVTGIGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRALY 183
C CL+S + ++F D V E G D + F+ + I Y A Y
Sbjct: 706 CLTCLISLIEQSRYLQFRDCPV-----EWGWCRDLQSFIFIFKSHNRIVLERPEYGYATY 760
Query: 184 FFEVVVTVPAMVVSHIMLEAYK 249
FFE+V ++P M+ A K
Sbjct: 761 FFEIVKSLPIQWQIQRMVTAMK 782
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 692 CTKLHQYIQGMGVQIQVHPQYVKNQL 769
CTKL I+ M V+ VHP Y+K+ L
Sbjct: 501 CTKLTSMIREMFVKKNVHPPYLKHLL 526
>12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 615 IPSFWLIIAYISPSSIILSMYVSA*SG-PDNSTREATRSTKALKKFLSASEYSSYTLNLK 439
IP +W+ + YISP S L++ + G DNS TK + F+ +Y + L
Sbjct: 1235 IPKWWIWLYYISPMSWTLNLLFTTQFGFEDNSNILVFGETKPIAAFV--RDYFGFHRELL 1292
Query: 438 P 436
P
Sbjct: 1293 P 1293
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 369 MPLNHDMALTTVSKIDKPLEMCISALAKPFHEV 271
MPL + L T ++D PL + +SAL P + V
Sbjct: 239 MPLASAVILNTFDELDAPLMVAMSALLPPIYTV 271
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 706 PVHTGNGCSDTSPSTVCEESVGSHDED 786
P++ NGC+D S T +E + S + D
Sbjct: 315 PLNQANGCNDESDHTSSDEGISSEEAD 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,257,513
Number of Sequences: 37544
Number of extensions: 468555
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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