Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00851
(811 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF129081-1|AAD28606.1| 445|Drosophila melanogaster COP9 signalo... 103 3e-22
AY071575-1|AAL49197.1| 445|Drosophila melanogaster RE63441p pro... 101 9e-22
AE014296-3441|AAF51652.1| 445|Drosophila melanogaster CG18332-P... 101 9e-22
AY070688-1|AAL48159.1| 471|Drosophila melanogaster RH24992p pro... 29 5.7
AY070669-1|AAL48140.1| 471|Drosophila melanogaster RH06651p pro... 29 5.7
AE014296-1677|AAF50253.2| 500|Drosophila melanogaster CG3424-PC... 29 5.7
AE014296-1676|AAF50252.1| 471|Drosophila melanogaster CG3424-PA... 29 5.7
AY118913-1|AAM50773.1| 399|Drosophila melanogaster LD21748p pro... 29 9.9
AE014296-1658|AAF50269.1| 399|Drosophila melanogaster CG3891-PA... 29 9.9
>AF129081-1|AAD28606.1| 445|Drosophila melanogaster COP9
signalosome subunit 3 CSN3 protein.
Length = 445
Score = 103 bits (247), Expect = 3e-22
Identities = 53/98 (54%), Positives = 64/98 (65%), Gaps = 14/98 (14%)
Frame = +1
Query: 1 DLCQLCLLSKCMKPAVEFLDTDVTGIGN--------------ELGGINDSKHFLLYYYYG 138
DLC L L +K A+ +LD D+T I ND+K+FLLY+YYG
Sbjct: 146 DLCLLSLKAKNFSVALPYLDADITDISTVAAECKTQQQQQSQHADANNDAKYFLLYFYYG 205
Query: 139 GMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKK 252
GMIYTA+KNY+RALYFFEV +T PAM +SHIMLEAYKK
Sbjct: 206 GMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKK 243
Score = 90.2 bits (214), Expect = 3e-18
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +2
Query: 479 KNFFNAFVERVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPE 658
K F + VASRV+L+ ++AE YILNMI+ GEIYA INQKDGMV+F D PEKY SPE
Sbjct: 328 KTFLTLSLSDVASRVQLASAVEAERYILNMIKSGEIYASINQKDGMVLFKDDPEKYNSPE 387
Query: 659 TLCVLEQQMAACTKLHQYIQGMGVQIQVHPQYVKNQL 769
++ + + I M +I ++P YVK L
Sbjct: 388 MFLNVQNNITHVLDQVRQINKMEEEIILNPMYVKKAL 424
Score = 70.1 bits (164), Expect = 3e-12
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
Frame = +3
Query: 246 QEIILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------KHRE 398
++ ++VSLI+ GK+ +PK T QV+ RF+KP++ YHDLV +S K+ E
Sbjct: 242 KKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANYYHDLVNVYANSSSEELRIIILKYSE 300
Query: 399 IFVRDKNMGLVNQVLNSMYKKNIQR 473
F RD NMGL QV S+YK+NIQR
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQR 325
>AY071575-1|AAL49197.1| 445|Drosophila melanogaster RE63441p
protein.
Length = 445
Score = 101 bits (243), Expect = 9e-22
Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 14/98 (14%)
Frame = +1
Query: 1 DLCQLCLLSKCMKPAVEFLDTDVTGIGN--------------ELGGINDSKHFLLYYYYG 138
DLC L L +K + +LD D+T I ND+K+FLLY+YYG
Sbjct: 146 DLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQQQQSQHADANNDAKYFLLYFYYG 205
Query: 139 GMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKK 252
GMIYTA+KNY+RALYFFEV +T PAM +SHIMLEAYKK
Sbjct: 206 GMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKK 243
Score = 89.4 bits (212), Expect = 5e-18
Identities = 46/97 (47%), Positives = 59/97 (60%)
Frame = +2
Query: 479 KNFFNAFVERVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPE 658
K F + VASRV L+ ++AE YILNMI+ GEIYA INQKDGMV+F D PEKY SPE
Sbjct: 328 KTFLTLSLSDVASRVHLASAVEAERYILNMIKSGEIYASINQKDGMVLFKDDPEKYNSPE 387
Query: 659 TLCVLEQQMAACTKLHQYIQGMGVQIQVHPQYVKNQL 769
++ + + I M +I ++P YVK L
Sbjct: 388 MFLNVQNNITHVLDQVRQINKMEEEIILNPMYVKKAL 424
Score = 70.5 bits (165), Expect = 2e-12
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
Frame = +3
Query: 246 QEIILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------KHRE 398
++ ++VSLI+ GK+ +PK T QV+ RF+KP++ YHDLV +S K+ E
Sbjct: 242 KKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 399 IFVRDKNMGLVNQVLNSMYKKNIQR 473
F RD NMGL QV S+YK+NIQR
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQR 325
>AE014296-3441|AAF51652.1| 445|Drosophila melanogaster CG18332-PA
protein.
Length = 445
Score = 101 bits (243), Expect = 9e-22
Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 14/98 (14%)
Frame = +1
Query: 1 DLCQLCLLSKCMKPAVEFLDTDVTGIGN--------------ELGGINDSKHFLLYYYYG 138
DLC L L +K + +LD D+T I ND+K+FLLY+YYG
Sbjct: 146 DLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQQQQSQHADANNDAKYFLLYFYYG 205
Query: 139 GMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKK 252
GMIYTA+KNY+RALYFFEV +T PAM +SHIMLEAYKK
Sbjct: 206 GMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKK 243
Score = 90.2 bits (214), Expect = 3e-18
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +2
Query: 479 KNFFNAFVERVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPE 658
K F + VASRV+L+ ++AE YILNMI+ GEIYA INQKDGMV+F D PEKY SPE
Sbjct: 328 KTFLTLSLSDVASRVQLASAVEAERYILNMIKSGEIYASINQKDGMVLFKDDPEKYNSPE 387
Query: 659 TLCVLEQQMAACTKLHQYIQGMGVQIQVHPQYVKNQL 769
++ + + I M +I ++P YVK L
Sbjct: 388 MFLNVQNNITHVLDQVRQINKMEEEIILNPMYVKKAL 424
Score = 70.5 bits (165), Expect = 2e-12
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 9/85 (10%)
Frame = +3
Query: 246 QEIILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------KHRE 398
++ ++VSLI+ GK+ +PK T QV+ RF+KP++ YHDLV +S K+ E
Sbjct: 242 KKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 399 IFVRDKNMGLVNQVLNSMYKKNIQR 473
F RD NMGL QV S+YK+NIQR
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQR 325
>AY070688-1|AAL48159.1| 471|Drosophila melanogaster RH24992p
protein.
Length = 471
Score = 29.5 bits (63), Expect = 5.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 41 QLLSFWTLTSLELAMSLAVLMIPNI 115
QL+S+WT T++ L M + ++++P I
Sbjct: 178 QLISYWTGTAVSLRMLICIMLVPLI 202
>AY070669-1|AAL48140.1| 471|Drosophila melanogaster RH06651p
protein.
Length = 471
Score = 29.5 bits (63), Expect = 5.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 41 QLLSFWTLTSLELAMSLAVLMIPNI 115
QL+S+WT T++ L M + ++++P I
Sbjct: 178 QLISYWTGTAVSLRMLICIMLVPLI 202
>AE014296-1677|AAF50253.2| 500|Drosophila melanogaster CG3424-PC,
isoform C protein.
Length = 500
Score = 29.5 bits (63), Expect = 5.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 41 QLLSFWTLTSLELAMSLAVLMIPNI 115
QL+S+WT T++ L M + ++++P I
Sbjct: 207 QLISYWTGTAVSLRMLICIMLVPLI 231
>AE014296-1676|AAF50252.1| 471|Drosophila melanogaster CG3424-PA,
isoform A protein.
Length = 471
Score = 29.5 bits (63), Expect = 5.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 41 QLLSFWTLTSLELAMSLAVLMIPNI 115
QL+S+WT T++ L M + ++++P I
Sbjct: 178 QLISYWTGTAVSLRMLICIMLVPLI 202
>AY118913-1|AAM50773.1| 399|Drosophila melanogaster LD21748p
protein.
Length = 399
Score = 28.7 bits (61), Expect = 9.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 536 PLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYA-SPETLCVLEQQMAACTKLHQY 712
PLQA +L ++ ++ DG +F +P A P MAA H Y
Sbjct: 110 PLQANQIMLQAAQQQPQMQVMQLPDGQTIFYQTPTIAALDPNAAANAAAAMAAQPTPH-Y 168
Query: 713 IQGMGVQIQVHPQYVKNQLEVT 778
+ G +Q++P NQ T
Sbjct: 169 LNINGQLVQINPAPSANQAAPT 190
>AE014296-1658|AAF50269.1| 399|Drosophila melanogaster CG3891-PA
protein.
Length = 399
Score = 28.7 bits (61), Expect = 9.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 536 PLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYA-SPETLCVLEQQMAACTKLHQY 712
PLQA +L ++ ++ DG +F +P A P MAA H Y
Sbjct: 110 PLQANQIMLQAAQQQPQMQVMQLPDGQTIFYQTPTIAALDPNAAANAAAAMAAQPTPH-Y 168
Query: 713 IQGMGVQIQVHPQYVKNQLEVT 778
+ G +Q++P NQ T
Sbjct: 169 LNINGQLVQINPAPSANQAAPT 190
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,846,289
Number of Sequences: 53049
Number of extensions: 836153
Number of successful extensions: 1817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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