Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00850
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    97   2e-21
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.0  
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p...    25   8.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.1  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
 Frame = -2

Query: 683 ITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNXXXXXXXXXXXRPSRAE* 507
           I+GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G N             +    
Sbjct: 8   ISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVN 66

Query: 506 HSPEPQASRNIRFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 327
           +           F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  F
Sbjct: 67  NLVYSFRLSPTSF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANF 125

Query: 326 KELQFFTGESMDCDGMVAMMEYRDLMVRKY 237
           K+  F+ GESMD D MV +M YR+  +  Y
Sbjct: 126 KDYDFYIGESMDPDAMVVLMNYREDGITPY 155



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 258 RLDGTQIPIMMFFKHGLEEEKF 193
           R DG   P M+FFK GL  EKF
Sbjct: 148 REDGIT-PYMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 152 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVP 250
           AS ELL+       NFS+ R CL+N ++  CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812


>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 222 KTS*LVFAYHQVSIFHHGNHAITIHGLPSKEL 317
           +T  LV  + +  +  + NH I +H L SK L
Sbjct: 53  ETELLVLRFREFGVKDNHNHPINLHSLRSKSL 84


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 312 ELKFLKPAEDVFHYFVHVCFKYFNLVR 392
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,380
Number of Sequences: 5004
Number of extensions: 55018
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)