Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00849
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   125   7e-30
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    97   4e-21
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    91   1e-19
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.36 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   7.7  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  125 bits (302), Expect = 7e-30
 Identities = 59/67 (88%), Positives = 66/67 (98%)
 Frame = +1

Query: 256 VYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIP 435
           VYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+P
Sbjct: 91  VYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLP 150

Query: 436 HIHKSLI 456
           HI+K L+
Sbjct: 151 HINKQLL 157



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 176 LQFPVGRIHRHLKNRTTSHGRVGA 247
           LQFPVGR+ R LK +T ++ RVGA
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGA 87


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 256 VYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVI 432
           VY AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+
Sbjct: 51  VYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVV 110

Query: 433 PHIHKSLIGKKGGPGAP 483
           P+I+  L+ K+ G G P
Sbjct: 111 PNINAHLLPKQSGKGKP 127



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 LQFPVGRIHRHLKNRTTSHGRVGATAEFIL 265
           L FPVGR+HR L+    +  RVGA A   L
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYL 53


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
 Frame = +1

Query: 256 VYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVI 432
           VY AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+
Sbjct: 51  VYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVV 110

Query: 433 PHIHKSLIGKKGG 471
           P+I+  L+ K  G
Sbjct: 111 PNINAHLLPKTSG 123



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 LQFPVGRIHRHLKNRTTSHGRVGATAEFIL 265
           L FPVGR+HR L+    +  RVGA A   L
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYL 53


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 371
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 319 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 423
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,366
Number of Sequences: 5004
Number of extensions: 67229
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)