Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00849
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.7  
AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic hor...    23   4.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 404 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 300
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 276 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 310


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 404 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 300
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 244 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 278


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 670 ISITYSYIFSPDQQFQSH 617
           I+ TYS   SPD QF ++
Sbjct: 474 INFTYSLALSPDGQFGNY 491


>AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic
           hormone-I protein.
          Length = 52

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 93  VSKWAVVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIG 206
           V+   V+++  +L   RRK  QDQ + D +  L E IG
Sbjct: 14  VNSMDVLRQRVLLELARRKALQDQAQIDANRRLLETIG 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 676 LHISITYSYIFSPDQQFQSHHCP 608
           LH+ +T     SP  Q Q+  CP
Sbjct: 671 LHLHLTSPPARSPSSQAQASQCP 693


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 191 GRIHRHLKNRTTSHGRVGATAEFILPLFWNILQQRFW 301
           GR  R    R  S  ++   +  + PLF+  +   +W
Sbjct: 407 GRRRRRRTPRYNSVSKIDRASRIVFPLFFLAINVFYW 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,737
Number of Sequences: 438
Number of extensions: 4849
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)