Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00848
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251...    35   0.074
03_01_0170 + 1389759-1391159                                           30   1.6  
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   2.1  
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234...    29   4.8  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    28   6.4  
01_06_1239 + 35652053-35654050                                         28   8.5  

>03_05_1060 -
           30023407-30023553,30024274-30024390,30024958-30025129,
           30026116-30026198,30026299-30026917,30027157-30027280,
           30027637-30027745,30028214-30028399,30028716-30028763,
           30028808-30028979,30029034-30029209
          Length = 650

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
 Frame = +3

Query: 72  ASEPDYHTNEDLLYPYSPIP-YFGMYHLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRR 248
           AS P Y  ++ +  PY  I  +FG+     +  G G  + V    EG++T L R  G  R
Sbjct: 248 ASSPIYEVSQ-INRPYGQIKRWFGIRLYYALRDGTGSSNVVASMSEGRLTTLLRSIGIGR 306

Query: 249 SYM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQ 428
               T + + S R   ++++ PT    C    +T+         +   SA  R+     +
Sbjct: 307 ERSNTGTNKLSCRGPRKKNR-PTKRLDCRPPVSTVDTAGAPLEGEEKASAANRAPVSGGR 365

Query: 429 TSPGLSTP 452
            SPGL  P
Sbjct: 366 RSPGLKWP 373


>03_01_0170 + 1389759-1391159
          Length = 466

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 309 ICFPLLWPLLTSANCSFTCSSDESLLPCQG*SLFLLPSNRRGVP 178
           +  PLL  LL SA+ +    +D  LL C   +  +LP  RR VP
Sbjct: 5   LAVPLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 359 NWKCRCRPQTRRESCWVF 306
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>03_05_0195 -
           21822418-21822441,21822480-21822659,21823337-21823453,
           21824347-21824412,21825592-21825683,21825924-21825987,
           21826098-21826176,21826248-21826387,21827253-21827334,
           21827565-21827572,21828005-21828103,21828208-21828285,
           21828379-21828472,21828726-21828823,21830299-21830502
          Length = 474

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/95 (23%), Positives = 41/95 (43%)
 Frame = -3

Query: 528 FLPTHARILNVVRIFRISVGNDESSEALTILATSAAHRLLIGPVLMVTVLTPPSLM*LEV 349
           FL T      VV I   ++  + ++        SAA  ++   +L++T +TP S     V
Sbjct: 92  FLTTILIGTTVVNIGATAIVTEAATAMFGEAGVSAATGVMTVAILLLTEITPKS-----V 146

Query: 348 SLSSTDTTGILLGICFPLLWPLLTSANCSFTCSSD 244
           ++ +       +  C   + P+ + ANC F+   D
Sbjct: 147 AVHNATEVARFVTSCMAFIGPVSSWANCHFSVHGD 181


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 236  SYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLI 96
            S P     F    + D++Y  STN   + +  T +  W  WI +VLI
Sbjct: 1085 SLPFASRAFQAHAIQDLLYLASTNNE-NRIALTSIAEWPEWILEVLI 1130


>01_06_1239 + 35652053-35654050
          Length = 665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -3

Query: 585 SVWVFKSAGSSYPAP*YKPFLPTHARILNVVRIFRISVGNDESSEALTILATSAAHRLLI 406
           SVWV  S  SS P    KP  P H R  +V  +  +      +  A  + A  + HR  +
Sbjct: 35  SVWVNPSLPSSQPFHRRKPAEPQHQRQDHVPDLPALLAALSAARTASDLAAAVSPHR-PV 93

Query: 405 GPVLMVTVLT 376
            P L+ T+L+
Sbjct: 94  SPRLLGTLLS 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,097,710
Number of Sequences: 37544
Number of extensions: 478283
Number of successful extensions: 1289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)