Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00847
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    67   3e-12
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    38   0.002
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    34   0.019
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCP 294
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+  RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +1

Query: 508 KEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 615
           K+  LV+IA DVDPIELV+FLPALC+KMGVPY IVK
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVK 181



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXX 431
           R++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                  
Sbjct: 60  RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119

Query: 432 XXXXXXXXRPNTIRSGTNTVTKLVEKRR 515
                   +P  ++ G N V  L+E ++
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKK 147



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = +2

Query: 605 ALSRGXSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELR 763
           A+ +  +RLG ++H+KT   LA+T V   D+   + +V A+  NF+ +Y+E R
Sbjct: 178 AIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESR 230


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 478 AQTQSPSWSRKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 612
           A   + + +R     +V+A D +PIE++L LP LC    VPY  V
Sbjct: 36  ANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 511 EGALVVIAHDVDPIELVLFLPALCRKMGVPY 603
           E  LV++A D+ P++++  +P LC    VPY
Sbjct: 69  EKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 769 SASELLVALVEVRLDGFHDLREGGAVTRL 683
           +A+  ++ L++ ++DGFHD+ +G    RL
Sbjct: 305 NATNTILQLLDSKVDGFHDIFDGRLFIRL 333


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 362  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA-WMRIYLGHLTNLDK 213
            L+N ++ L  +L + L  +V++  H  TTL Y+L    + IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 261 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 362
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 443 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 273
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,927
Number of Sequences: 5004
Number of extensions: 57300
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)