Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00847
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    93   2e-19
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    71   1e-12
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    63   2e-10
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    63   2e-10
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    38   0.006
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.032
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    31   0.90 
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   2.8  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   2.8  
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 56/158 (35%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+  +        K P           
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 328 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSWS 504
               R AF    +                           + +R         T +    
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 505 RKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 618
            +   LV+IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 187



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/87 (45%), Positives = 50/87 (57%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                  
Sbjct: 66  RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAG 125

Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRR 515
                  RPNT+R G NT+T+LVE RR
Sbjct: 126 KKEEVTKRPNTVRHGVNTITRLVETRR 152



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/65 (38%), Positives = 43/65 (66%)
 Frame = +2

Query: 569 CQRYAVKWAYHTALSRGXSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 748
           C++Y V +A    + +G + LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER
Sbjct: 175 CRKYNVPYA----IIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 230

Query: 749 YEELR 763
           +EE+R
Sbjct: 231 HEEIR 235


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 40/87 (45%), Positives = 50/87 (57%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                  
Sbjct: 66  RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------ 107

Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRR 515
                  RPNT+R G NT+T+LVE RR
Sbjct: 108 --TEVTKRPNTVRHGVNTITRLVETRR 132



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 64



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 508 KEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 618
           +   LV+IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 167



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/65 (38%), Positives = 43/65 (66%)
 Frame = +2

Query: 569 CQRYAVKWAYHTALSRGXSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 748
           C++Y V +A    + +G + LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER
Sbjct: 155 CRKYNVPYA----IIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 210

Query: 749 YEELR 763
           +EE+R
Sbjct: 211 HEEIR 215


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLD 326
           RQ A+LQ+RLKVPP INQF   LD
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALD 192


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 380
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 478 AQTQSPSWSRKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 615
           A   + + +R    ++V+A D +P+E++L LP LC    VPY  V+
Sbjct: 39  ANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVR 84


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 422 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 303
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 505 RKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 612
           R E  + ++A +V PI++   +P +C +  +PY  +
Sbjct: 82  RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 460 PIPSDPAQTQSPSWSRKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 615
           P PS+P  T  P+   +  +++  AHD DP++  +  P   + + +P+  VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 460 PIPSDPAQTQSPSWSRKEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 615
           P PS+P  T  P+   +  +++  AHD DP++  +  P   + + +P+  VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +1

Query: 160 EKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWTRLQL 339
           +K+  N A G GI+  +     V+   +  +H R + FS +   P+  + +P  WTRLQ 
Sbjct: 583 KKKTDNDANGNGIKRIKS-EIIVKQETFTDMHGRNVPFSPM---PMPGS-VPPDWTRLQS 637

Query: 340 RAFS 351
            +FS
Sbjct: 638 PSFS 641


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 295 LRSTNLPRHWTRLQLRA 345
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,780
Number of Sequences: 27780
Number of extensions: 341786
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)