Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00846
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.8  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   2.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   2.3  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   7.1  
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    24   9.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.4  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 55  IFHCPNSQHRRRSVSLHGRVFD 120
           +FHC +S HR   ++LH R  D
Sbjct: 477 VFHCEHSAHRAPHLALHFRNTD 498


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 130 HDWDQKPSHAKRRSAYDVDY*GSEK 56
           HD  ++PSH K  SA  +D   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 252
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 308  AAVICF*QTYVMSYGVGASWRRQSTLI*CF-RPLNSRN 198
            A+ ICF  +YV   G+ A +R+  ++I  F R L  RN
Sbjct: 2105 ASFICFGLSYVTFAGLPAFYRQAPSIIPAFYRSLGKRN 2142


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 69 RAVKNPMILKSQ*LLT 22
          RAVKNPMIL+ +  LT
Sbjct: 12 RAVKNPMILEKERQLT 27


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 172 SRHYSRCAEAEQRCHDWDQKPSHAKRRSAYDVDY*GSEK 56
           SR     A AE++     ++   AKR  +YD +Y  +E+
Sbjct: 30  SREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAER 68


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 249 P*STNSVRHYISLSKTDNCCSSI 317
           P S+NS  +  S+   DNCC  I
Sbjct: 98  PDSSNSHHNNESICNNDNCCREI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,952
Number of Sequences: 5004
Number of extensions: 33190
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)