Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00846
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217     30   0.72 
11_01_0583 + 4636832-4637521                                           28   2.2  
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589...    27   3.8  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   3.8  
01_06_0340 - 28554951-28554955,28555017-28555260                       27   3.8  
04_03_0314 - 14238620-14240128                                         26   8.9  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    26   8.9  

>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
          Length = 443

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 309 SSSYLFLTNLCNVLRSWCFMAAAVNFDIMLPAIKFP*YDWAEA 181
           SS+Y+ L+N+  V   W  +A A    I L   K P Y W EA
Sbjct: 314 SSTYILLSNVYAVNGKWDSVAKARKCTIGLEIRKEPVYSWIEA 356


>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -2

Query: 276 NVLRSWCFMAAAVNFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 97
           ++ +S C   ++   +++L A KF  Y W+   ++ A++P+ L  +  AT  + +P +  
Sbjct: 166 SLCKSGCLDGSSSEGEVLL-ATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAA 223

Query: 96  DAPP 85
            A P
Sbjct: 224 AAAP 227


>11_06_0631 -
           25656885-25657000,25658591-25658658,25658957-25658996,
           25659742-25659820,25659918-25661707,25662030-25662037,
           25662305-25662367,25662504-25662820
          Length = 826

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 309 SSSYLFLTNLCNVLRSWCFMAAAVNFDIMLPAIKFP*YDWAEA 181
           SS+Y+ L+N+  V   W  +A      I L   K P Y W EA
Sbjct: 599 SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEA 641


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 109 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 219
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>01_06_0340 - 28554951-28554955,28555017-28555260
          Length = 82

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 206 NLMAGSIISKLTAAAMKHQLRKTLHKFVKNR 298
           NL   S  S+  AAA +H + + LH+F+  R
Sbjct: 4   NLKNASATSEAAAAASRHPMAEWLHRFLHGR 34


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 189 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNP 52
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 165 WREALQLQPSRITGI*WPEALYQS*LPPP 251
           W EAL L P  + G   P +LYQ  L  P
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,040
Number of Sequences: 37544
Number of extensions: 240341
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)