Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00846
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 29 1.1
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 29 1.1
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 4.5
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 4.5
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 4.5
U53154-12|AAC25847.2| 380|Caenorhabditis elegans Serpentine rec... 27 6.0
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 26 7.9
AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical ... 26 7.9
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 26 7.9
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 26 7.9
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 2 LICIVYLVRSYCDLRIMGFFTALIVNIVGGASL 100
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 2 LICIVYLVRSYCDLRIMGFFTALIVNIVGGASL 100
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 237 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 97
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 237 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 97
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 112 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 234
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 112 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 234
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>U53154-12|AAC25847.2| 380|Caenorhabditis elegans Serpentine
receptor, class w protein127 protein.
Length = 380
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 297 LFLTNLCNVLRSWCFMAAAVNFDIMLPAIKFP 202
LFL N +L+ W F+ A +F ++P++ FP
Sbjct: 210 LFLKNNSRLLKLWNFVNALASF--IIPSVAFP 239
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 174
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
>AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical
protein Y51B9A.6 protein.
Length = 516
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 59 FTALIVNIVGGASLCMGGFLIPIVAP 136
F IV I+ +SL G FL+P + P
Sbjct: 419 FVMSIVQIIACSSLMAGSFLVPALTP 444
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 174
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 174
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,226,128
Number of Sequences: 27780
Number of extensions: 188802
Number of successful extensions: 391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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