Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00846
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   8.6  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 169 RHYSRCAEAEQRCHDWDQK-PSHAKRRSAYDVDY*GSEKSHDP*V--TVTSHQIYNTN 5
           + YSR  E EQ+ +  ++K   + +R      D    E+S +P +  ++++  I+N N
Sbjct: 37  KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNN 94


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 169 RHYSRCAEAEQRCHDWDQK-PSHAKRRSAYDVDY*GSEKSHDP*V--TVTSHQIYNTN 5
           + YSR  E EQ+ +  ++K   + +R      D    E+S +P +  ++++  I+N N
Sbjct: 37  KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNN 94


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 338 LNSEINMMRWEKKKKK 385
           LNSE + +RWE  +K+
Sbjct: 83  LNSEAHRIRWESVQKE 98


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 318 VLTSSSYLFLTNLCNVLRSWCFM 250
           V  +SS   LTN  NV+  W ++
Sbjct: 23  VRENSSGKNLTNTLNVIHKWKYL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,471
Number of Sequences: 438
Number of extensions: 2511
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)