Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00845
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87...    29   1.3  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    26   9.4  
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    26   9.4  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    26   9.4  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    26   9.4  

>02_01_0119 -
           876317-876610,876937-877099,877222-877302,877508-877570,
           878246-878355
          Length = 236

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 21  IALSSIL----QAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 188
           + LSS++    QAK+DK N+L+   ++L     + +  +   E + ET +  ++  K  +
Sbjct: 87  LELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNEL 145

Query: 189 RDETSSL 209
           RDE  +L
Sbjct: 146 RDEKVTL 152


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 30  SSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQII-RNVKGPVRDETSS 206
           +S L A+  K  +   +V +   +GS G+  +V    +G  S+  + R+   P +    +
Sbjct: 665 TSELLAREGKGGLQLLIVILPEVSGSYGKIKRVCETDLGIVSQCCLPRHASRPNKQYLEN 724

Query: 207 LFLNLNVKLGGCDRLLSITALG*GI 281
           + L +NVK+GG + +L    +  GI
Sbjct: 725 VALKINVKVGGRNTVLERAFIRNGI 749


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 12  RVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 179
           RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 322 RVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 176 HVSDDLTAGLPNELDLHLSTLAL 108
           HV DD+ A  P+++D H   L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 12  RVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 179
           RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 322 RVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,938,361
Number of Sequences: 37544
Number of extensions: 175977
Number of successful extensions: 414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)