Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00845
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    71   4e-13
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   2.7  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   2.7  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   2.7  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    26   8.4  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 36/49 (73%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
 Frame = +3

Query: 51  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRD 194
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVRE 48


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 123 QVKVEFIGETSRQIIRNVKGP-VRDETSS 206
           Q+ +E++G    Q+IR +K P +RD  SS
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRDYISS 295


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 6753 EPTGPEDQ---KLSKNKKGEWVYP 6773



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 7472 EPTGPEDQ---KLSKNKKGEWVYP 7492



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123   EYTGPENQYGQALSRHEQERWVYP 52
             E TGPE+Q    LS++++  WVYP
Sbjct: 10009 EPTGPEDQ---KLSKNKKGEWVYP 10029


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123   EYTGPENQYGQALSRHEQERWVYP 52
             E TGPE+Q    LS++++  WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123  EYTGPENQYGQALSRHEQERWVYP 52
            E TGPE+Q    LS++++  WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 123   EYTGPENQYGQALSRHEQERWVYP 52
             E TGPE+Q    LS++++  WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 379 FMLCIYSELNTIRWSSLTVL*V*HINLCRWY 287
           + L +YSE N I+W  L+++    I LC  Y
Sbjct: 180 YTLALYSESNVIQWEILSLIIAAGIVLCFQY 210


>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   WCTCAYCIKLDITSQNG*TQRSCSCRESA 91
           W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 148


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 379 FMLCIYSELNTIRWSSLTVL*V*HINLCRWY 287
           F++  Y+E NTI+W +L++L    I +C  Y
Sbjct: 180 FIMMPYNENNTIQWKALSLLISAGILICFQY 210


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   WCTCAYCIKLDITSQNG*TQRSCSCRESA 91
           W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 34  WECCAYWVSKRMSSQEHHTCPNCNCRVKA 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,459
Number of Sequences: 27780
Number of extensions: 160004
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)