Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00842
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 34 0.055
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 34 0.055
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 30 1.2
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 1.6
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 29 2.1
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 28 3.6
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 28 4.8
07_01_0064 + 463358-464341 27 6.3
07_01_0058 + 438157-438660 27 6.3
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 27 8.4
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 8.4
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 27 8.4
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 247 DKPLNEKNPYTTFGINKFA---DYTPEEQQSRLGLRLPAKKT*VLRLQSIGMLFQTK*MY 417
DK P T G ++FA D TPE+ G+ P + +RLQ + F+T+
Sbjct: 94 DKESCSSKPNATAGASRFALAGDQTPEDSPVIAGVASPKHQAAAVRLQKVYKSFRTRRQL 153
Query: 418 CDC 426
DC
Sbjct: 154 ADC 156
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 34.3 bits (75), Expect = 0.055
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 86 VVMASSAETDTPRHYDLNQA--KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEIN 253
+V A +A+TD + +++ K FE ++KEH R Y ++ Y++FKK + IN
Sbjct: 43 IVDADAADTDEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGIN 100
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 29 LLIHCAKMNFVSVALLIATVVMASSAETDTPRH-YDLNQAK--ELFEIFVKEHNREY 190
L+IHC +MN+V + V + P H Y L++ K E + E + Y
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYTLDEKKLPEHIKAMTPEERKAY 466
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 202 RQRAALSIIQETLGRDKPLNEKNPYTTFGINKFADYTPEEQQS 330
RQ ++ ++Q +L P E P +T D PE QQS
Sbjct: 1791 RQSISVPLVQSSLSSQNPPAEAEPASTLSRETARDVQPERQQS 1833
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 146 KELFEIFVKEHNREYKDDADRELHYQSFKK 235
K F+ ++KEHNR Y + ++ Y+ FK+
Sbjct: 183 KARFQDWMKEHNRSYSTEEEKARCYEIFKE 212
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 131 DLNQA-KELFEIFVKEHNREYKDDADRELHYQSFK 232
D QA K F+ ++ + NR YKD+A++ ++ FK
Sbjct: 85 DEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFK 119
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 158 EIFVKEHNREYKDDADRELHYQSFKKHLAEI 250
E ++ ++ R YKDDA++ ++ FK ++A I
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANVAFI 68
>07_01_0064 + 463358-464341
Length = 327
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 77 IATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHL 241
+A V MAS A T RH + ++ EH R YKD A++ ++ FK ++
Sbjct: 1 MAKVTMASRAGTMEARH----------DKWMAEHGRTYKDAAEKARRFRVFKANV 45
>07_01_0058 + 438157-438660
Length = 167
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 164 FVKEHNREYKDDADRELHYQSFK 232
++ + NREYKD+A++ ++ FK
Sbjct: 88 WMNKFNREYKDEAEKAYRFEIFK 110
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 412 FISFGIAFR*TEVAELMSS*QAASIPTCSAVPQEYNQQI 296
F+++G + R TE ++ +S A+ P C+ V NQ+I
Sbjct: 222 FVAWGGSIRRTEGFKMSNSLNASRFPFCAVVMASTNQRI 260
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 350 LLRRHKFCDFSLSECYSKRNKCIVTACKMFKIYRI 454
L R + DFS+ C S N VT K K Y +
Sbjct: 716 LAREKEINDFSIKRCISVLNSMDVTKAKKVKAYTV 750
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +2
Query: 50 MNFVSVALLIATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSF 229
M + ALL+ + A+ + +A+ L+ + EH + Y + E Y +F
Sbjct: 5 MALAAAALLLLLSLAAADMSIVSYGERSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAF 64
Query: 230 KKHLAEIN 253
+ +L I+
Sbjct: 65 RDNLRYID 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,269
Number of Sequences: 37544
Number of extensions: 207319
Number of successful extensions: 535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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