Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00841
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   1.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   5.4  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 486 SNFTHRSSSFKALVIDRTSTEYVAGLNVN 400
           S+F HR SSF +L+ + +    +  LN+N
Sbjct: 201 SDFLHRESSFSSLIDEESKLASLRNLNIN 229


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = -2

Query: 261 WFNSRRETTHVSNVV-----LAFFVSVKAM 187
           WF+ + E +HVSNV+     L+FFV V A+
Sbjct: 282 WFSKKTEESHVSNVIDLLLNLSFFVYVGAI 311


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -2

Query: 510 RYPCYSLVSNFTHRSSSFKALVIDRTSTEYVAGLNVNYSLCR 385
           RY C  L+  +T     F    + R++   + G  ++Y +C+
Sbjct: 313 RYTCQHLIKRYTKFQRVFFLTNVLRSAVIIIVGTAISYGVCK 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,635
Number of Sequences: 5004
Number of extensions: 64293
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)