Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00841
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    33   0.31 
U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    28   8.8  

>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 251 LLNHSKIIISCWPI*NGFVDYVSVPCTAISLFTSGTXXXXXXXXXRQRL*LTLSP----A 418
           LLN S I  S WP+ +G+V  +++P +  S+  +GT          QR    L       
Sbjct: 160 LLNASVIQFSNWPLSDGYVTSLNLPASPASVPKTGTHHSSNSMSFLQRCKNVLFHIAILV 219

Query: 419 TYSVLVRSI-TRALNEDERWVKLETNE*Q 502
           T  V ++++ T   N +  W+++E NE Q
Sbjct: 220 TRFVQMKTLDTMFSNRNYPWIQVELNEAQ 248


>U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical
           protein R01H2.4 protein.
          Length = 482

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 115 IKFHRCNF*ITSLLLPCATRSCVIHCFYAYEKS*NYIGYMRRF 243
           IK HR  F   ++++P   R  ++  FY Y+     +  MR+F
Sbjct: 248 IKIHRGKFEFNTVMVPAQNRQLLMLVFYGYKSGLCSLEVMRKF 290


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 346 HLRHPSNIAGLDYPTETIVNIKPSYIFSAGS 438
           H RHPS + G   PT+ I+N   S+ F + S
Sbjct: 172 HFRHPSTVTG-RLPTKGIINTIKSWSFRSSS 201


>Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical
           protein C54C8.2 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 303 KPFYIGQQLIIILEWFNSRRETTHVSNVVLAF 208
           K F++G Q+  ++EWF    E +H SN V+A+
Sbjct: 215 KFFFVGHQIPNLMEWF----ERSHASNDVVAW 242


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 262 MVQQPA*NDACIQCSSSFFRKRKSNE 185
           M++QP  N AC+QC SS     K+ +
Sbjct: 148 MMRQPCANPACVQCPSSSSNAAKNGQ 173


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 262 MVQQPA*NDACIQCSSSFFRKRKSNE 185
           M++QP  N AC+QC SS     K+ +
Sbjct: 148 MMRQPCANPACVQCPSSSSNAAKNGQ 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,158
Number of Sequences: 27780
Number of extensions: 352269
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)