Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00839X
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   0.88 
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   3.5  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 70   REKELGPIYHEIAVQFAD 123
            RE++L PIY +I++ FAD
Sbjct: 2118 REQKLMPIYQQISIHFAD 2135


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 97  GRWDRVLSRGPLQPSRLSAVRSQ 29
           G WDR +   P   SRLS +  Q
Sbjct: 289 GNWDRAMGASPHLSSRLSTIVQQ 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,438
Number of Sequences: 5004
Number of extensions: 8586
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)