Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00839X
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0001 + 26976510-26977382                                         31   0.27 
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337...    29   1.5  
07_03_0098 - 13383385-13384392                                         27   3.4  
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    27   5.9  
01_07_0229 + 42161770-42164562                                         26   7.7  

>05_07_0001 + 26976510-26977382
          Length = 290

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 121 PRTVQLSRGRWDRVLSRGPLQPSRLSAVRSQ 29
           PR  +  R RW  +L   P  P  +SAVRS+
Sbjct: 4   PRPCRFGRPRWPSILGLSPFGPRPISAVRSE 34


>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
            12933905-12934118,12934199-12934551,12934642-12934864,
            12934953-12935230,12935456-12935725,12935817-12935939,
            12936025-12936102,12936351-12936527,12936597-12936686,
            12937010-12937120,12937397-12937585,12937667-12937858,
            12937990-12938076,12938153-12938257,12938340-12938396,
            12938471-12938545,12938647-12938763,12938876-12939000,
            12939082-12939121,12939241-12939291,12939382-12939569,
            12939808-12939901,12939976-12940149,12940242-12940337,
            12940597-12940689,12940794-12940955,12941034-12941240,
            12941356-12941728,12942379-12942436,12943096-12943171,
            12943874-12943941,12944321-12944642
          Length = 2433

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 52   EKAVKAREKELGPIYHEIAVQFAD 123
            ++ ++AR K+L P+Y +IA++FA+
Sbjct: 2245 QENIEARTKQLMPLYTQIAIRFAE 2268


>07_03_0098 - 13383385-13384392
          Length = 335

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 121 PRTVQLSRGR-WDRVLSRGPLQPSRLSAVRSQAPG 20
           P  V LSR R WDR L R       +SA+RSQ PG
Sbjct: 137 PAHVDLSRKRTWDR-LEREQEVGDVISAIRSQNPG 170


>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
            10759617-10759709,10759913-10760008,10760457-10760724,
            10760805-10761047,10761298-10761422,10761499-10761615,
            10761705-10761779,10761886-10761942,10762035-10762139,
            10762244-10762330,10762790-10763047,10763075-10763263,
            10763418-10763528,10763640-10763729,10763814-10763990,
            10764075-10764152,10764412-10764726,10764819-10765162,
            10765304-10765541,10765631-10765998,10766106-10766316,
            10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 55   KAVKAREKELGPIYHEIAVQFAD 123
            +++ AR K+L PIY ++A +FA+
Sbjct: 2079 RSIIARMKQLMPIYTQVATRFAE 2101


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 123 VRELYSYLVVDGTEFFLAGLYSLLGCQQFGLKLPDS 16
           V  L   L + G+   L GLY L G     L +PDS
Sbjct: 652 VSTLKKLLDIHGSHMRLLGLYKLSGETSLALTIPDS 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,801,014
Number of Sequences: 37544
Number of extensions: 70750
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)