Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00839X
         (360 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   3.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   4.6  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    22   6.1  

>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +1

Query: 103 IAVQFAD--CTTPPRGCW 150
           +AV FA    T PP GCW
Sbjct: 383 VAVLFAHWLTTRPPTGCW 400


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 6    LPKSSPGA*DRTADSREGCKGPRERTRSHLPRDSCTVRG 122
            +P SSP   +R A+ R      R+R R H   +   V G
Sbjct: 1076 MPSSSPRTSERRANIRARMARLRQRHRQHQQDERRGVEG 1114


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 57   GCKGPRERTRSHLPRDSCTVRGLHDTAERMLE 152
            G   PRE   S  P    T RG H  A   +E
Sbjct: 1362 GRSTPRELLESSQPAGGGTPRGRHSWASNSVE 1393


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,710
Number of Sequences: 2352
Number of extensions: 2162
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26654730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)