Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00839X
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   0.83 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   4.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   4.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   4.4  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 57  GCKGPRERTRSH----LPRDSCTVRGLHDTAERMLEKGCISD 170
           G KGPR+  RSH    LPR  C +    D +  +++   +++
Sbjct: 61  GSKGPRDFPRSHRFKSLPR--CQLSNKRDRSRELIKAAILAN 100


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 65  RPARKNSVPSTTR 103
           RP+R N+VPS+ R
Sbjct: 18  RPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 65  RPARKNSVPSTTR 103
           RP+R N+VPS+ R
Sbjct: 18  RPSRGNAVPSSQR 30


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
          protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 57 GCKGPRERTRSHLP 98
          GC  P E T S+LP
Sbjct: 19 GCGPPEEETGSNLP 32


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
          protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 57 GCKGPRERTRSHLP 98
          GC  P E T S+LP
Sbjct: 19 GCGPPEEETGSNLP 32


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
          receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 57 GCKGPRERTRSHLP 98
          GC  P E T S+LP
Sbjct: 19 GCGPPEEETGSNLP 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,785
Number of Sequences: 438
Number of extensions: 763
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)