Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00838
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.6  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   4.5  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   6.0  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.9  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 28/116 (24%), Positives = 49/116 (42%)
 Frame = +2

Query: 257 KLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVNLNPQ 436
           +LP+ +   QL    E  L     + ++  LL      PEN L+  + T  F R++L+P 
Sbjct: 414 RLPDSQTFVQLYSSTESDLL---KEGLSRILLYFFTYFPENILKLKIDTSIFLRLDLSPG 470

Query: 437 LFNYCYSVALMHRRDTRKVRVKNFQKYFPLNSWIPKYSLKLVKPQLLFHQTFHAYL 604
           + +  +S   +H  +     +    +Y P   W        V   L++ QT H+ L
Sbjct: 471 MLDRPFS--RLHVEN-----IIQILRYLPEVKWFDVVRSPFVFLCLMYLQTSHSKL 519


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 413 ARVNLNPQLFNYCYSVALMHRRDTRKVRVKN-FQKYFPLNSWIPKYSLKLVKPQLLFHQT 589
           A   L+  + +  + +  +  R  R++ ++N F+K  PL +WIP   L+       F +T
Sbjct: 663 ANATLDKTVHSAYWLMTCLKDRVDRELTLRNEFRKRHPLLTWIPT-PLESSVMACAFCKT 721

Query: 590 FHAYLLSFHETTLRRT 637
           F AYL S  E    +T
Sbjct: 722 F-AYLASIEEKNGTKT 736


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +2

Query: 251 PRKLPEFK--IATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVN 424
           P+K+P FK  I+  L K + F     + Q++   +         + L    +   FA+  
Sbjct: 24  PKKIPLFKKKISQALKKASTF-----ERQKLVRRIKNCRASEDADTLGRFEAEFEFAKQF 78

Query: 425 LNPQLFNYCYSVALMHRRDTRKVRVKNFQKYFP 523
              +  +YCY   ++  +D RK+  +N    FP
Sbjct: 79  DFTKFVDYCYYKKILKNKDFRKLLNENLHVDFP 111


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +2

Query: 266 EFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 394
           E+++   LP+D   SL++   Q+   +  G+L  V   +++++
Sbjct: 163 EYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEI 205


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 119 DERIIWTIEQQQRGFQKRQPFLIIL 45
           +E  +W IEQQ + F   +P  +IL
Sbjct: 106 EEEYLWCIEQQLKSFPSGKPLNMIL 130


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 266 EFKIATQLPKDAEFSLFLPKHQE 334
           E   A+    D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,554
Number of Sequences: 5004
Number of extensions: 59957
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)