Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00837X
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    31   0.089
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.7  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 31.5 bits (68), Expect = 0.089
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 514 RIQLRDCIYRRVSLHKNWLPRPWCYFQPSPWLPQRCPFS-----LNVV*RVKIPISMKYD 350
           R   RD + +   LH N  PR  C+FQPS +     P +       +    KIPI+   D
Sbjct: 459 RFSRRDNLRQHERLHVNASPRLACFFQPSGYYSSGAPGAPVQPQKPIEDLNKIPINQGMD 518

Query: 349 DTQMIRTSL 323
            +Q+  T+L
Sbjct: 519 SSQIENTNL 527


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 498 IVFIVVFLYIRTGFPDPGVISNL 430
           I F  + LY+RT F +PG +  +
Sbjct: 355 ISFTCIGLYVRTAFQNPGYVDKI 377


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 281  KGHTNSQSTRNSLPSIRAKLSLH 213
            +GH +S STR SL    ++ SLH
Sbjct: 1313 EGHADSSSTRTSLAHQDSRKSLH 1335


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 528 CHSCLAYNYEIVFIVVFLYIR 466
           C +C+AYNYE  +   F  +R
Sbjct: 32  CSNCIAYNYECTYGQPFKRLR 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,339
Number of Sequences: 5004
Number of extensions: 42609
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)